Cargando…
1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening
Technological advancements are constantly increasing the size and complexity of data resulting from large-scale RNA interference screens. This fact has led biologists to ask complex questions, which the existing, fully automated analyses are often not adequate to answer. We present a concept of 1Cli...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591157/ https://www.ncbi.nlm.nih.gov/pubmed/23484084 http://dx.doi.org/10.1155/2013/156932 |
_version_ | 1782261993275654144 |
---|---|
author | Zwolinski, Lukasz Kozak, Marta Kozak, Karol |
author_facet | Zwolinski, Lukasz Kozak, Marta Kozak, Karol |
author_sort | Zwolinski, Lukasz |
collection | PubMed |
description | Technological advancements are constantly increasing the size and complexity of data resulting from large-scale RNA interference screens. This fact has led biologists to ask complex questions, which the existing, fully automated analyses are often not adequate to answer. We present a concept of 1Click1View (1C1V) as a methodology for interactive analytic software tools. 1C1V can be applied for two-dimensional visualization of image-based screening data sets from High Content Screening (HCS). Through an easy-to-use interface, one-click, one-view concept, and workflow based architecture, visualization method facilitates the linking of image data with numeric data. Such method utilizes state-of-the-art interactive visualization tools optimized for fast visualization of large scale image data sets. We demonstrate our method on an HCS dataset consisting of multiple cell features from two screening assays. |
format | Online Article Text |
id | pubmed-3591157 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-35911572013-03-12 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening Zwolinski, Lukasz Kozak, Marta Kozak, Karol Biomed Res Int Methodology Report Technological advancements are constantly increasing the size and complexity of data resulting from large-scale RNA interference screens. This fact has led biologists to ask complex questions, which the existing, fully automated analyses are often not adequate to answer. We present a concept of 1Click1View (1C1V) as a methodology for interactive analytic software tools. 1C1V can be applied for two-dimensional visualization of image-based screening data sets from High Content Screening (HCS). Through an easy-to-use interface, one-click, one-view concept, and workflow based architecture, visualization method facilitates the linking of image data with numeric data. Such method utilizes state-of-the-art interactive visualization tools optimized for fast visualization of large scale image data sets. We demonstrate our method on an HCS dataset consisting of multiple cell features from two screening assays. Hindawi Publishing Corporation 2013 2012-12-27 /pmc/articles/PMC3591157/ /pubmed/23484084 http://dx.doi.org/10.1155/2013/156932 Text en Copyright © 2013 Lukasz Zwolinski et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methodology Report Zwolinski, Lukasz Kozak, Marta Kozak, Karol 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title | 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title_full | 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title_fullStr | 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title_full_unstemmed | 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title_short | 1Click1View: Interactive Visualization Methodology for RNAi Cell-Based Microscopic Screening |
title_sort | 1click1view: interactive visualization methodology for rnai cell-based microscopic screening |
topic | Methodology Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591157/ https://www.ncbi.nlm.nih.gov/pubmed/23484084 http://dx.doi.org/10.1155/2013/156932 |
work_keys_str_mv | AT zwolinskilukasz 1click1viewinteractivevisualizationmethodologyforrnaicellbasedmicroscopicscreening AT kozakmarta 1click1viewinteractivevisualizationmethodologyforrnaicellbasedmicroscopicscreening AT kozakkarol 1click1viewinteractivevisualizationmethodologyforrnaicellbasedmicroscopicscreening |