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Exploring the Morphospace of Communication Efficiency in Complex Networks
Graph theoretical analysis has played a key role in characterizing global features of the topology of complex networks, describing diverse systems such as protein interactions, food webs, social relations and brain connectivity. How system elements communicate with each other depends not only on the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591454/ https://www.ncbi.nlm.nih.gov/pubmed/23505455 http://dx.doi.org/10.1371/journal.pone.0058070 |
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author | Goñi, Joaquín Avena-Koenigsberger, Andrea Velez de Mendizabal, Nieves van den Heuvel, Martijn P. Betzel, Richard F. Sporns, Olaf |
author_facet | Goñi, Joaquín Avena-Koenigsberger, Andrea Velez de Mendizabal, Nieves van den Heuvel, Martijn P. Betzel, Richard F. Sporns, Olaf |
author_sort | Goñi, Joaquín |
collection | PubMed |
description | Graph theoretical analysis has played a key role in characterizing global features of the topology of complex networks, describing diverse systems such as protein interactions, food webs, social relations and brain connectivity. How system elements communicate with each other depends not only on the structure of the network, but also on the nature of the system's dynamics which are constrained by the amount of knowledge and resources available for communication processes. Complementing widely used measures that capture efficiency under the assumption that communication preferentially follows shortest paths across the network (“routing”), we define analytic measures directed at characterizing network communication when signals flow in a random walk process (“diffusion”). The two dimensions of routing and diffusion efficiency define a morphospace for complex networks, with different network topologies characterized by different combinations of efficiency measures and thus occupying different regions of this space. We explore the relation of network topologies and efficiency measures by examining canonical network models, by evolving networks using a multi-objective optimization strategy, and by investigating real-world network data sets. Within the efficiency morphospace, specific aspects of network topology that differentially favor efficient communication for routing and diffusion processes are identified. Charting regions of the morphospace that are occupied by canonical, evolved or real networks allows inferences about the limits of communication efficiency imposed by connectivity and dynamics, as well as the underlying selection pressures that have shaped network topology. |
format | Online Article Text |
id | pubmed-3591454 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35914542013-03-15 Exploring the Morphospace of Communication Efficiency in Complex Networks Goñi, Joaquín Avena-Koenigsberger, Andrea Velez de Mendizabal, Nieves van den Heuvel, Martijn P. Betzel, Richard F. Sporns, Olaf PLoS One Research Article Graph theoretical analysis has played a key role in characterizing global features of the topology of complex networks, describing diverse systems such as protein interactions, food webs, social relations and brain connectivity. How system elements communicate with each other depends not only on the structure of the network, but also on the nature of the system's dynamics which are constrained by the amount of knowledge and resources available for communication processes. Complementing widely used measures that capture efficiency under the assumption that communication preferentially follows shortest paths across the network (“routing”), we define analytic measures directed at characterizing network communication when signals flow in a random walk process (“diffusion”). The two dimensions of routing and diffusion efficiency define a morphospace for complex networks, with different network topologies characterized by different combinations of efficiency measures and thus occupying different regions of this space. We explore the relation of network topologies and efficiency measures by examining canonical network models, by evolving networks using a multi-objective optimization strategy, and by investigating real-world network data sets. Within the efficiency morphospace, specific aspects of network topology that differentially favor efficient communication for routing and diffusion processes are identified. Charting regions of the morphospace that are occupied by canonical, evolved or real networks allows inferences about the limits of communication efficiency imposed by connectivity and dynamics, as well as the underlying selection pressures that have shaped network topology. Public Library of Science 2013-03-07 /pmc/articles/PMC3591454/ /pubmed/23505455 http://dx.doi.org/10.1371/journal.pone.0058070 Text en © 2013 Goni et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Goñi, Joaquín Avena-Koenigsberger, Andrea Velez de Mendizabal, Nieves van den Heuvel, Martijn P. Betzel, Richard F. Sporns, Olaf Exploring the Morphospace of Communication Efficiency in Complex Networks |
title | Exploring the Morphospace of Communication Efficiency in Complex Networks |
title_full | Exploring the Morphospace of Communication Efficiency in Complex Networks |
title_fullStr | Exploring the Morphospace of Communication Efficiency in Complex Networks |
title_full_unstemmed | Exploring the Morphospace of Communication Efficiency in Complex Networks |
title_short | Exploring the Morphospace of Communication Efficiency in Complex Networks |
title_sort | exploring the morphospace of communication efficiency in complex networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591454/ https://www.ncbi.nlm.nih.gov/pubmed/23505455 http://dx.doi.org/10.1371/journal.pone.0058070 |
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