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Micro-computed tomography: Introducing new dimensions to taxonomy

Abstract. Continuous improvements in the resolution of three-dimensional imaging have led to an increased application of these techniques in conventional taxonomic research in recent years. Coupled with an ever increasing research effort in cybertaxonomy, three-dimensional imaging could give a boost...

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Autores principales: Faulwetter, Sarah, Vasileiadou, Aikaterini, Kouratoras, Michail, Thanos Dailianis, Arvanitidis,  Christos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591762/
https://www.ncbi.nlm.nih.gov/pubmed/23653515
http://dx.doi.org/10.3897/zookeys.263.4261
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author Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Thanos Dailianis,
Arvanitidis,  Christos
author_facet Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Thanos Dailianis,
Arvanitidis,  Christos
author_sort Faulwetter, Sarah
collection PubMed
description Abstract. Continuous improvements in the resolution of three-dimensional imaging have led to an increased application of these techniques in conventional taxonomic research in recent years. Coupled with an ever increasing research effort in cybertaxonomy, three-dimensional imaging could give a boost to the development of virtual specimen collections, allowing rapid and simultaneous access to accurate virtual representations of type material. This paper explores the potential of micro-computed tomography (X-ray micro-tomography), a non-destructive three-dimensional imaging technique based on mapping X-ray attenuation in the scanned object, for supporting research in systematics and taxonomy. The subsequent use of these data as virtual type material, so-called “cybertypes”, and the creation of virtual collections lie at the core of this potential. Sample preparation, image acquisition, data processing and presentation of results are demonstrated using polychaetes (bristle worms), a representative taxon of macro-invertebrates, as a study object. Effects of the technique on the morphological, anatomical and molecular identity of the specimens are investigated. The paper evaluates the results and discusses the potential and the limitations of the technique for creating cybertypes. It also discusses the challenges that the community might face to establish virtual collections. Potential future applications of three-dimensional information in taxonomic research are outlined, including an outlook to new ways of producing, disseminating and publishing taxonomic information.
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spelling pubmed-35917622013-05-07 Micro-computed tomography: Introducing new dimensions to taxonomy Faulwetter, Sarah Vasileiadou, Aikaterini Kouratoras, Michail Thanos Dailianis, Arvanitidis,  Christos Zookeys Article Abstract. Continuous improvements in the resolution of three-dimensional imaging have led to an increased application of these techniques in conventional taxonomic research in recent years. Coupled with an ever increasing research effort in cybertaxonomy, three-dimensional imaging could give a boost to the development of virtual specimen collections, allowing rapid and simultaneous access to accurate virtual representations of type material. This paper explores the potential of micro-computed tomography (X-ray micro-tomography), a non-destructive three-dimensional imaging technique based on mapping X-ray attenuation in the scanned object, for supporting research in systematics and taxonomy. The subsequent use of these data as virtual type material, so-called “cybertypes”, and the creation of virtual collections lie at the core of this potential. Sample preparation, image acquisition, data processing and presentation of results are demonstrated using polychaetes (bristle worms), a representative taxon of macro-invertebrates, as a study object. Effects of the technique on the morphological, anatomical and molecular identity of the specimens are investigated. The paper evaluates the results and discusses the potential and the limitations of the technique for creating cybertypes. It also discusses the challenges that the community might face to establish virtual collections. Potential future applications of three-dimensional information in taxonomic research are outlined, including an outlook to new ways of producing, disseminating and publishing taxonomic information. Pensoft Publishers 2013-02-04 /pmc/articles/PMC3591762/ /pubmed/23653515 http://dx.doi.org/10.3897/zookeys.263.4261 Text en Sarah Faulwetter, Aikaterini Vasileiadou, Michail Kouratoras, Thanos Dailianis,  Christos Arvanitidis http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Article
Faulwetter, Sarah
Vasileiadou, Aikaterini
Kouratoras, Michail
Thanos Dailianis,
Arvanitidis,  Christos
Micro-computed tomography: Introducing new dimensions to taxonomy
title Micro-computed tomography: Introducing new dimensions to taxonomy
title_full Micro-computed tomography: Introducing new dimensions to taxonomy
title_fullStr Micro-computed tomography: Introducing new dimensions to taxonomy
title_full_unstemmed Micro-computed tomography: Introducing new dimensions to taxonomy
title_short Micro-computed tomography: Introducing new dimensions to taxonomy
title_sort micro-computed tomography: introducing new dimensions to taxonomy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591762/
https://www.ncbi.nlm.nih.gov/pubmed/23653515
http://dx.doi.org/10.3897/zookeys.263.4261
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