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The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics
Real-time brain functional MRI (rt-fMRI) allows in vivo non-invasive monitoring of neural networks. The use of multivariate data-driven analysis methods such as independent component analysis (ICA) offers an attractive trade-off between data interpretability and information extraction, and can be us...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593622/ https://www.ncbi.nlm.nih.gov/pubmed/23483841 http://dx.doi.org/10.3389/fnhum.2013.00064 |
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author | Soldati, Nicola Calhoun, Vince D. Bruzzone, Lorenzo Jovicich, Jorge |
author_facet | Soldati, Nicola Calhoun, Vince D. Bruzzone, Lorenzo Jovicich, Jorge |
author_sort | Soldati, Nicola |
collection | PubMed |
description | Real-time brain functional MRI (rt-fMRI) allows in vivo non-invasive monitoring of neural networks. The use of multivariate data-driven analysis methods such as independent component analysis (ICA) offers an attractive trade-off between data interpretability and information extraction, and can be used during both task-based and rest experiments. The purpose of this study was to assess the effectiveness of different ICA-based procedures to monitor in real-time a target IC defined from a functional localizer which also used ICA. Four novel methods were implemented to monitor ongoing brain activity in a sliding window approach. The methods differed in the ways in which a priori information, derived from ICA algorithms, was used to monitor a target independent component (IC). We implemented four different algorithms, all based on ICA. One Back-projection method used ICA to derive static spatial information from the functional localizer, off-line, which was then back-projected dynamically during the real-time acquisition. The other three methods used real-time ICA algorithms that dynamically exploited temporal, spatial, or spatial-temporal priors during the real-time acquisition. The methods were evaluated by simulating a rt-fMRI experiment that used real fMRI data. The performance of each method was characterized by the spatial and/or temporal correlation with the target IC component monitored, computation time, and intrinsic stochastic variability of the algorithms. In this study the Back-projection method, which could monitor more than one IC of interest, outperformed the other methods. These results are consistent with a functional task that gives stable target ICs over time. The dynamic adaptation possibilities offered by the other ICA methods proposed may offer better performance than the Back-projection in conditions where the functional activation shows higher spatial and/or temporal variability. |
format | Online Article Text |
id | pubmed-3593622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-35936222013-03-12 The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics Soldati, Nicola Calhoun, Vince D. Bruzzone, Lorenzo Jovicich, Jorge Front Hum Neurosci Neuroscience Real-time brain functional MRI (rt-fMRI) allows in vivo non-invasive monitoring of neural networks. The use of multivariate data-driven analysis methods such as independent component analysis (ICA) offers an attractive trade-off between data interpretability and information extraction, and can be used during both task-based and rest experiments. The purpose of this study was to assess the effectiveness of different ICA-based procedures to monitor in real-time a target IC defined from a functional localizer which also used ICA. Four novel methods were implemented to monitor ongoing brain activity in a sliding window approach. The methods differed in the ways in which a priori information, derived from ICA algorithms, was used to monitor a target independent component (IC). We implemented four different algorithms, all based on ICA. One Back-projection method used ICA to derive static spatial information from the functional localizer, off-line, which was then back-projected dynamically during the real-time acquisition. The other three methods used real-time ICA algorithms that dynamically exploited temporal, spatial, or spatial-temporal priors during the real-time acquisition. The methods were evaluated by simulating a rt-fMRI experiment that used real fMRI data. The performance of each method was characterized by the spatial and/or temporal correlation with the target IC component monitored, computation time, and intrinsic stochastic variability of the algorithms. In this study the Back-projection method, which could monitor more than one IC of interest, outperformed the other methods. These results are consistent with a functional task that gives stable target ICs over time. The dynamic adaptation possibilities offered by the other ICA methods proposed may offer better performance than the Back-projection in conditions where the functional activation shows higher spatial and/or temporal variability. Frontiers Media S.A. 2013-03-11 /pmc/articles/PMC3593622/ /pubmed/23483841 http://dx.doi.org/10.3389/fnhum.2013.00064 Text en Copyright © 2013 Soldati, Calhoun, Bruzzone and Jovicich. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc. |
spellingShingle | Neuroscience Soldati, Nicola Calhoun, Vince D. Bruzzone, Lorenzo Jovicich, Jorge The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title | The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title_full | The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title_fullStr | The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title_full_unstemmed | The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title_short | The Use of a priori Information in ICA-Based Techniques for Real-Time fMRI: An Evaluation of Static/Dynamic and Spatial/Temporal Characteristics |
title_sort | use of a priori information in ica-based techniques for real-time fmri: an evaluation of static/dynamic and spatial/temporal characteristics |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593622/ https://www.ncbi.nlm.nih.gov/pubmed/23483841 http://dx.doi.org/10.3389/fnhum.2013.00064 |
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