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Splicing-Related Features of Introns Serve to Propel Evolution

The role of spliceosomal intronic structures played in evolution has only begun to be elucidated. Comparative genomic analyses of fungal snoRNA sequences, which are often contained within introns and/or exons, revealed that about one-third of snoRNA-associated introns in three major snoRNA gene clus...

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Autores principales: Luo, Yuping, Li, Chun, Gong, Xi, Wang, Yanlu, Zhang, Kunshan, Cui, Yaru, Sun, Yi Eve, Li, Siguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596301/
https://www.ncbi.nlm.nih.gov/pubmed/23516505
http://dx.doi.org/10.1371/journal.pone.0058547
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author Luo, Yuping
Li, Chun
Gong, Xi
Wang, Yanlu
Zhang, Kunshan
Cui, Yaru
Sun, Yi Eve
Li, Siguang
author_facet Luo, Yuping
Li, Chun
Gong, Xi
Wang, Yanlu
Zhang, Kunshan
Cui, Yaru
Sun, Yi Eve
Li, Siguang
author_sort Luo, Yuping
collection PubMed
description The role of spliceosomal intronic structures played in evolution has only begun to be elucidated. Comparative genomic analyses of fungal snoRNA sequences, which are often contained within introns and/or exons, revealed that about one-third of snoRNA-associated introns in three major snoRNA gene clusters manifested polymorphisms, likely resulting from intron loss and gain events during fungi evolution. Genomic deletions can clearly be observed as one mechanism underlying intron and exon loss, as well as generation of complex introns where several introns lie in juxtaposition without intercalating exons. Strikingly, by tracking conserved snoRNAs in introns, we found that some introns had moved from one position to another by excision from donor sites and insertion into target sties elsewhere in the genome without needing transposon structures. This study revealed the origin of many newly gained introns. Moreover, our analyses suggested that intron-containing sequences were more prone to sustainable structural changes than DNA sequences without introns due to intron's ability to jump within the genome via unknown mechanisms. We propose that splicing-related structural features of introns serve as an additional motor to propel evolution.
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spelling pubmed-35963012013-03-20 Splicing-Related Features of Introns Serve to Propel Evolution Luo, Yuping Li, Chun Gong, Xi Wang, Yanlu Zhang, Kunshan Cui, Yaru Sun, Yi Eve Li, Siguang PLoS One Research Article The role of spliceosomal intronic structures played in evolution has only begun to be elucidated. Comparative genomic analyses of fungal snoRNA sequences, which are often contained within introns and/or exons, revealed that about one-third of snoRNA-associated introns in three major snoRNA gene clusters manifested polymorphisms, likely resulting from intron loss and gain events during fungi evolution. Genomic deletions can clearly be observed as one mechanism underlying intron and exon loss, as well as generation of complex introns where several introns lie in juxtaposition without intercalating exons. Strikingly, by tracking conserved snoRNAs in introns, we found that some introns had moved from one position to another by excision from donor sites and insertion into target sties elsewhere in the genome without needing transposon structures. This study revealed the origin of many newly gained introns. Moreover, our analyses suggested that intron-containing sequences were more prone to sustainable structural changes than DNA sequences without introns due to intron's ability to jump within the genome via unknown mechanisms. We propose that splicing-related structural features of introns serve as an additional motor to propel evolution. Public Library of Science 2013-03-13 /pmc/articles/PMC3596301/ /pubmed/23516505 http://dx.doi.org/10.1371/journal.pone.0058547 Text en © 2013 Luo et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Luo, Yuping
Li, Chun
Gong, Xi
Wang, Yanlu
Zhang, Kunshan
Cui, Yaru
Sun, Yi Eve
Li, Siguang
Splicing-Related Features of Introns Serve to Propel Evolution
title Splicing-Related Features of Introns Serve to Propel Evolution
title_full Splicing-Related Features of Introns Serve to Propel Evolution
title_fullStr Splicing-Related Features of Introns Serve to Propel Evolution
title_full_unstemmed Splicing-Related Features of Introns Serve to Propel Evolution
title_short Splicing-Related Features of Introns Serve to Propel Evolution
title_sort splicing-related features of introns serve to propel evolution
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596301/
https://www.ncbi.nlm.nih.gov/pubmed/23516505
http://dx.doi.org/10.1371/journal.pone.0058547
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