Cargando…

Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes

The present study describes the molecular phylogenetic analysis of Dactylogyroides longicirrus (Monogenea: Dactylogyridae) infecting the gill filaments of fish Puntius sophore from the site Guwahati, Assam, India. The parasite Dactylogyroides longicirrus (Tripathi, 1959) Gusev, 1976 from Northeast I...

Descripción completa

Detalles Bibliográficos
Autores principales: Chiary, Haren Ram, Chaudhary, Anshu, Singh, Hridaya Shanker
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3602880/
https://www.ncbi.nlm.nih.gov/pubmed/23515574
http://dx.doi.org/10.6026/97320630009250
_version_ 1782263600130293760
author Chiary, Haren Ram
Chaudhary, Anshu
Singh, Hridaya Shanker
author_facet Chiary, Haren Ram
Chaudhary, Anshu
Singh, Hridaya Shanker
author_sort Chiary, Haren Ram
collection PubMed
description The present study describes the molecular phylogenetic analysis of Dactylogyroides longicirrus (Monogenea: Dactylogyridae) infecting the gill filaments of fish Puntius sophore from the site Guwahati, Assam, India. The parasite Dactylogyroides longicirrus (Tripathi, 1959) Gusev, 1976 from Northeast Indian region is presented based on sequence data of a 738 base-pair fragment of ribosomal 18S small subunit and first internal transcribed spacer (ITS 1). Phylogenetic relationships were inferred using neighbour joning and maximum parsimony methods and the results support the validation of D. longicirrus. The study is also supported by secondary structure model prediction by using minimum free energy which can be considered a promising tool for monogenean species identification. This is the first report of this parasite from Northeast region of India, with this, the 18S and ITS 1 rDNA region amplified in the study is also the first sequence of the genus Dactylogyroides.
format Online
Article
Text
id pubmed-3602880
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-36028802013-03-20 Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes Chiary, Haren Ram Chaudhary, Anshu Singh, Hridaya Shanker Bioinformation Hypothesis The present study describes the molecular phylogenetic analysis of Dactylogyroides longicirrus (Monogenea: Dactylogyridae) infecting the gill filaments of fish Puntius sophore from the site Guwahati, Assam, India. The parasite Dactylogyroides longicirrus (Tripathi, 1959) Gusev, 1976 from Northeast Indian region is presented based on sequence data of a 738 base-pair fragment of ribosomal 18S small subunit and first internal transcribed spacer (ITS 1). Phylogenetic relationships were inferred using neighbour joning and maximum parsimony methods and the results support the validation of D. longicirrus. The study is also supported by secondary structure model prediction by using minimum free energy which can be considered a promising tool for monogenean species identification. This is the first report of this parasite from Northeast region of India, with this, the 18S and ITS 1 rDNA region amplified in the study is also the first sequence of the genus Dactylogyroides. Biomedical Informatics 2013-03-02 /pmc/articles/PMC3602880/ /pubmed/23515574 http://dx.doi.org/10.6026/97320630009250 Text en © 2013 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Chiary, Haren Ram
Chaudhary, Anshu
Singh, Hridaya Shanker
Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title_full Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title_fullStr Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title_full_unstemmed Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title_short Phylogenetic analysis of the Dactylogyroides longicirrus (Monogenea: Dactylogyridae) based on the 18S and ITS 1 ribosomal genes
title_sort phylogenetic analysis of the dactylogyroides longicirrus (monogenea: dactylogyridae) based on the 18s and its 1 ribosomal genes
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3602880/
https://www.ncbi.nlm.nih.gov/pubmed/23515574
http://dx.doi.org/10.6026/97320630009250
work_keys_str_mv AT chiaryharenram phylogeneticanalysisofthedactylogyroideslongicirrusmonogeneadactylogyridaebasedonthe18sandits1ribosomalgenes
AT chaudharyanshu phylogeneticanalysisofthedactylogyroideslongicirrusmonogeneadactylogyridaebasedonthe18sandits1ribosomalgenes
AT singhhridayashanker phylogeneticanalysisofthedactylogyroideslongicirrusmonogeneadactylogyridaebasedonthe18sandits1ribosomalgenes