Cargando…
Motif discovery and transcription factor binding sites before and after the next-generation sequencing era
Motif discovery has been one of the most widely studied problems in bioinformatics ever since genomic and protein sequences have been available. In particular, its application to the de novo prediction of putative over-represented transcription factor binding sites in nucleotide sequences has been,...
Autores principales: | Zambelli, Federico, Pesole, Graziano, Pavesi, Giulio |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3603212/ https://www.ncbi.nlm.nih.gov/pubmed/22517426 http://dx.doi.org/10.1093/bib/bbs016 |
Ejemplares similares
-
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
por: Zambelli, Federico, et al.
Publicado: (2009) -
PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
por: Zambelli, Federico, et al.
Publicado: (2013) -
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
por: Pavesi, Giulio, et al.
Publicado: (2007) -
MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes
por: Pavesi, Giulio, et al.
Publicado: (2006) -
Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules
por: Ronzio, Mirko, et al.
Publicado: (2020)