Using GBrowse 2.0 to visualize and share next-generation sequence data

GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming an...

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Detalles Bibliográficos
Autor principal: Stein, Lincoln D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3603216/
https://www.ncbi.nlm.nih.gov/pubmed/23376193
http://dx.doi.org/10.1093/bib/bbt001
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author Stein, Lincoln D.
author_facet Stein, Lincoln D.
author_sort Stein, Lincoln D.
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description GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming and limited smooth track panning. As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provides step-by-step instructions for configuring GBrowse to display NGS data.
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spelling pubmed-36032162013-03-20 Using GBrowse 2.0 to visualize and share next-generation sequence data Stein, Lincoln D. Brief Bioinform Papers GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming and limited smooth track panning. As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provides step-by-step instructions for configuring GBrowse to display NGS data. Oxford University Press 2013-03 2013-02-01 /pmc/articles/PMC3603216/ /pubmed/23376193 http://dx.doi.org/10.1093/bib/bbt001 Text en © The Author 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Papers
Stein, Lincoln D.
Using GBrowse 2.0 to visualize and share next-generation sequence data
title Using GBrowse 2.0 to visualize and share next-generation sequence data
title_full Using GBrowse 2.0 to visualize and share next-generation sequence data
title_fullStr Using GBrowse 2.0 to visualize and share next-generation sequence data
title_full_unstemmed Using GBrowse 2.0 to visualize and share next-generation sequence data
title_short Using GBrowse 2.0 to visualize and share next-generation sequence data
title_sort using gbrowse 2.0 to visualize and share next-generation sequence data
topic Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3603216/
https://www.ncbi.nlm.nih.gov/pubmed/23376193
http://dx.doi.org/10.1093/bib/bbt001
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