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Evolving Digital Ecological Networks

“It is hard to realize that the living world as we know it is just one among many possibilities” [1]. Evolving digital ecological networks are webs of interacting, self-replicating, and evolving computer programs (i.e., digital organisms) that experience the same major ecological interactions as bio...

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Detalles Bibliográficos
Autores principales: Fortuna, Miguel A., Zaman, Luis, Wagner, Aaron P., Ofria, Charles
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3605903/
https://www.ncbi.nlm.nih.gov/pubmed/23533370
http://dx.doi.org/10.1371/journal.pcbi.1002928
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author Fortuna, Miguel A.
Zaman, Luis
Wagner, Aaron P.
Ofria, Charles
author_facet Fortuna, Miguel A.
Zaman, Luis
Wagner, Aaron P.
Ofria, Charles
author_sort Fortuna, Miguel A.
collection PubMed
description “It is hard to realize that the living world as we know it is just one among many possibilities” [1]. Evolving digital ecological networks are webs of interacting, self-replicating, and evolving computer programs (i.e., digital organisms) that experience the same major ecological interactions as biological organisms (e.g., competition, predation, parasitism, and mutualism). Despite being computational, these programs evolve quickly in an open-ended way, and starting from only one or two ancestral organisms, the formation of ecological networks can be observed in real-time by tracking interactions between the constantly evolving organism phenotypes. These phenotypes may be defined by combinations of logical computations (hereafter tasks) that digital organisms perform and by expressed behaviors that have evolved. The types and outcomes of interactions between phenotypes are determined by task overlap for logic-defined phenotypes and by responses to encounters in the case of behavioral phenotypes. Biologists use these evolving networks to study active and fundamental topics within evolutionary ecology (e.g., the extent to which the architecture of multispecies networks shape coevolutionary outcomes, and the processes involved).
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spelling pubmed-36059032013-03-26 Evolving Digital Ecological Networks Fortuna, Miguel A. Zaman, Luis Wagner, Aaron P. Ofria, Charles PLoS Comput Biol Topic Page “It is hard to realize that the living world as we know it is just one among many possibilities” [1]. Evolving digital ecological networks are webs of interacting, self-replicating, and evolving computer programs (i.e., digital organisms) that experience the same major ecological interactions as biological organisms (e.g., competition, predation, parasitism, and mutualism). Despite being computational, these programs evolve quickly in an open-ended way, and starting from only one or two ancestral organisms, the formation of ecological networks can be observed in real-time by tracking interactions between the constantly evolving organism phenotypes. These phenotypes may be defined by combinations of logical computations (hereafter tasks) that digital organisms perform and by expressed behaviors that have evolved. The types and outcomes of interactions between phenotypes are determined by task overlap for logic-defined phenotypes and by responses to encounters in the case of behavioral phenotypes. Biologists use these evolving networks to study active and fundamental topics within evolutionary ecology (e.g., the extent to which the architecture of multispecies networks shape coevolutionary outcomes, and the processes involved). Public Library of Science 2013-03-07 /pmc/articles/PMC3605903/ /pubmed/23533370 http://dx.doi.org/10.1371/journal.pcbi.1002928 Text en © 2013 Fortuna et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Topic Page
Fortuna, Miguel A.
Zaman, Luis
Wagner, Aaron P.
Ofria, Charles
Evolving Digital Ecological Networks
title Evolving Digital Ecological Networks
title_full Evolving Digital Ecological Networks
title_fullStr Evolving Digital Ecological Networks
title_full_unstemmed Evolving Digital Ecological Networks
title_short Evolving Digital Ecological Networks
title_sort evolving digital ecological networks
topic Topic Page
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3605903/
https://www.ncbi.nlm.nih.gov/pubmed/23533370
http://dx.doi.org/10.1371/journal.pcbi.1002928
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