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Efficient Posterior Probability Mapping Using Savage-Dickey Ratios

Statistical Parametric Mapping (SPM) is the dominant paradigm for mass-univariate analysis of neuroimaging data. More recently, a Bayesian approach termed Posterior Probability Mapping (PPM) has been proposed as an alternative. PPM offers two advantages: (i) inferences can be made about effect size...

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Detalles Bibliográficos
Autores principales: Penny, William D., Ridgway, Gerard R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606143/
https://www.ncbi.nlm.nih.gov/pubmed/23533640
http://dx.doi.org/10.1371/journal.pone.0059655
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author Penny, William D.
Ridgway, Gerard R.
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Ridgway, Gerard R.
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description Statistical Parametric Mapping (SPM) is the dominant paradigm for mass-univariate analysis of neuroimaging data. More recently, a Bayesian approach termed Posterior Probability Mapping (PPM) has been proposed as an alternative. PPM offers two advantages: (i) inferences can be made about effect size thus lending a precise physiological meaning to activated regions, (ii) regions can be declared inactive. This latter facility is most parsimoniously provided by PPMs based on Bayesian model comparisons. To date these comparisons have been implemented by an Independent Model Optimization (IMO) procedure which separately fits null and alternative models. This paper proposes a more computationally efficient procedure based on Savage-Dickey approximations to the Bayes factor, and Taylor-series approximations to the voxel-wise posterior covariance matrices. Simulations show the accuracy of this Savage-Dickey-Taylor (SDT) method to be comparable to that of IMO. Results on fMRI data show excellent agreement between SDT and IMO for second-level models, and reasonable agreement for first-level models. This Savage-Dickey test is a Bayesian analogue of the classical SPM-F and allows users to implement model comparison in a truly interactive manner.
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spelling pubmed-36061432013-03-26 Efficient Posterior Probability Mapping Using Savage-Dickey Ratios Penny, William D. Ridgway, Gerard R. PLoS One Research Article Statistical Parametric Mapping (SPM) is the dominant paradigm for mass-univariate analysis of neuroimaging data. More recently, a Bayesian approach termed Posterior Probability Mapping (PPM) has been proposed as an alternative. PPM offers two advantages: (i) inferences can be made about effect size thus lending a precise physiological meaning to activated regions, (ii) regions can be declared inactive. This latter facility is most parsimoniously provided by PPMs based on Bayesian model comparisons. To date these comparisons have been implemented by an Independent Model Optimization (IMO) procedure which separately fits null and alternative models. This paper proposes a more computationally efficient procedure based on Savage-Dickey approximations to the Bayes factor, and Taylor-series approximations to the voxel-wise posterior covariance matrices. Simulations show the accuracy of this Savage-Dickey-Taylor (SDT) method to be comparable to that of IMO. Results on fMRI data show excellent agreement between SDT and IMO for second-level models, and reasonable agreement for first-level models. This Savage-Dickey test is a Bayesian analogue of the classical SPM-F and allows users to implement model comparison in a truly interactive manner. Public Library of Science 2013-03-22 /pmc/articles/PMC3606143/ /pubmed/23533640 http://dx.doi.org/10.1371/journal.pone.0059655 Text en © 2013 Penny, Ridgway http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Penny, William D.
Ridgway, Gerard R.
Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title_full Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title_fullStr Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title_full_unstemmed Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title_short Efficient Posterior Probability Mapping Using Savage-Dickey Ratios
title_sort efficient posterior probability mapping using savage-dickey ratios
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606143/
https://www.ncbi.nlm.nih.gov/pubmed/23533640
http://dx.doi.org/10.1371/journal.pone.0059655
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