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Using statistical methods and genotyping to detect tuberculosis outbreaks

BACKGROUND: Early identification of outbreaks remains a key component in continuing to reduce the burden of infectious disease in the United States. Previous studies have applied statistical methods to detect unexpected cases of disease in space or time. The objectives of our study were to assess th...

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Autores principales: Kammerer, J Steve, Shang, Nong, Althomsons, Sandy P, Haddad, Maryam B, Grant, Juliana, Navin, Thomas R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608068/
https://www.ncbi.nlm.nih.gov/pubmed/23497235
http://dx.doi.org/10.1186/1476-072X-12-15
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author Kammerer, J Steve
Shang, Nong
Althomsons, Sandy P
Haddad, Maryam B
Grant, Juliana
Navin, Thomas R
author_facet Kammerer, J Steve
Shang, Nong
Althomsons, Sandy P
Haddad, Maryam B
Grant, Juliana
Navin, Thomas R
author_sort Kammerer, J Steve
collection PubMed
description BACKGROUND: Early identification of outbreaks remains a key component in continuing to reduce the burden of infectious disease in the United States. Previous studies have applied statistical methods to detect unexpected cases of disease in space or time. The objectives of our study were to assess the ability and timeliness of three spatio-temporal methods to detect known outbreaks of tuberculosis. METHODS: We used routinely available molecular and surveillance data to retrospectively assess the effectiveness of three statistical methods in detecting tuberculosis outbreaks: county-based log-likelihood ratio, cumulative sums, and a spatial scan statistic. RESULTS: Our methods identified 8 of the 9 outbreaks, and 6 outbreaks would have been identified 1–52 months (median = 10 months) before local public health authorities identified them. Assuming no delays in data availability, 46 (59.7%) of the 77 patients in the 9 outbreaks were identified after our statistical methods would have detected the outbreak but before local public health authorities became aware of the problem. CONCLUSIONS: Statistical methods, when applied retrospectively to routinely collected tuberculosis data, can successfully detect known outbreaks, potentially months before local public health authorities become aware of the problem. The three methods showed similar results; no single method was clearly superior to the other two. Further study to elucidate the performance of these methods in detecting tuberculosis outbreaks will be done in a prospective analysis.
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spelling pubmed-36080682013-04-01 Using statistical methods and genotyping to detect tuberculosis outbreaks Kammerer, J Steve Shang, Nong Althomsons, Sandy P Haddad, Maryam B Grant, Juliana Navin, Thomas R Int J Health Geogr Methodology BACKGROUND: Early identification of outbreaks remains a key component in continuing to reduce the burden of infectious disease in the United States. Previous studies have applied statistical methods to detect unexpected cases of disease in space or time. The objectives of our study were to assess the ability and timeliness of three spatio-temporal methods to detect known outbreaks of tuberculosis. METHODS: We used routinely available molecular and surveillance data to retrospectively assess the effectiveness of three statistical methods in detecting tuberculosis outbreaks: county-based log-likelihood ratio, cumulative sums, and a spatial scan statistic. RESULTS: Our methods identified 8 of the 9 outbreaks, and 6 outbreaks would have been identified 1–52 months (median = 10 months) before local public health authorities identified them. Assuming no delays in data availability, 46 (59.7%) of the 77 patients in the 9 outbreaks were identified after our statistical methods would have detected the outbreak but before local public health authorities became aware of the problem. CONCLUSIONS: Statistical methods, when applied retrospectively to routinely collected tuberculosis data, can successfully detect known outbreaks, potentially months before local public health authorities become aware of the problem. The three methods showed similar results; no single method was clearly superior to the other two. Further study to elucidate the performance of these methods in detecting tuberculosis outbreaks will be done in a prospective analysis. BioMed Central 2013-03-16 /pmc/articles/PMC3608068/ /pubmed/23497235 http://dx.doi.org/10.1186/1476-072X-12-15 Text en Copyright ©2013 Kammerer et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methodology
Kammerer, J Steve
Shang, Nong
Althomsons, Sandy P
Haddad, Maryam B
Grant, Juliana
Navin, Thomas R
Using statistical methods and genotyping to detect tuberculosis outbreaks
title Using statistical methods and genotyping to detect tuberculosis outbreaks
title_full Using statistical methods and genotyping to detect tuberculosis outbreaks
title_fullStr Using statistical methods and genotyping to detect tuberculosis outbreaks
title_full_unstemmed Using statistical methods and genotyping to detect tuberculosis outbreaks
title_short Using statistical methods and genotyping to detect tuberculosis outbreaks
title_sort using statistical methods and genotyping to detect tuberculosis outbreaks
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608068/
https://www.ncbi.nlm.nih.gov/pubmed/23497235
http://dx.doi.org/10.1186/1476-072X-12-15
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