Cargando…

Comparison of different imputation methods from low- to high-density panels using Chinese Holstein cattle

Imputation of high-density genotypes from low- or medium-density platforms is a promising way to enhance the efficiency of whole-genome selection programs at low cost. In this study, we compared the efficiency of three widely used imputation algorithms (fastPHASE, BEAGLE and findhap) using Chinese H...

Descripción completa

Detalles Bibliográficos
Autores principales:	Weng, Z., Zhang, Z., Zhang, Q., Fu, W., He, S., Ding, X.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cambridge University Press 2012
Materias:	Breeding and Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608330/ https://www.ncbi.nlm.nih.gov/pubmed/23228675 http://dx.doi.org/10.1017/S1751731112002224

Ejemplares similares

Invited review: overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits
por: Egger-Danner, C., et al.
Publicado: (2014)

Genomic evaluations for crossbred dairy cattle
por: Harris, B.L.
Publicado: (2022)

Application of imputation methods to genomic selection in Chinese Holstein cattle
por: Weng, Ziqing, et al.
Publicado: (2012)

Economics of using beef semen on dairy herds
por: Cabrera, V.E.
Publicado: (2021)

Genomic evaluation with multibreed and crossbred data
por: Misztal, I., et al.
Publicado: (2022)

Genomic evaluation methods to include intermediate correlated features such as high-throughput or omics phenotypes
por: Legarra, A., et al.
Publicado: (2022)

Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
por: Kriaridou, Christina, et al.
Publicado: (2023)

Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools
por: Sariya, Sanjeev, et al.
Publicado: (2019)

Genomic Prediction Using LD-Based Haplotypes Inferred From High-Density Chip and Imputed Sequence Variants in Chinese Simmental Beef Cattle
por: Li, Hongwei, et al.
Publicado: (2021)

Detection of Genomic Imprinting for Carcass Traits in Cattle Using Imputed High-Density Genotype Data
por: Kenny, David, et al.
Publicado: (2022)

Inference of Ancestries and Heterozygosity Proportion and Genotype Imputation in West African Cattle Populations
por: Gebrehiwot, Netsanet Z., et al.
Publicado: (2021)

Genetic differentiation of Mexican Holstein cattle and its relationship with Canadian and U.S. Holsteins
por: García-Ruiz, Adriana, et al.
Publicado: (2015)

Finding the Optimal Imputation Strategy for Small Cattle Populations
por: Korkuć, Paula, et al.
Publicado: (2019)

Analysis of Longevity Traits in Holstein Cattle: A Review
por: Hu, Honghong, et al.
Publicado: (2021)

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2014)

Genetic and nongenetic variation of heifer fertility in Italian Holstein cattle
por: Ferrari, V., et al.
Publicado: (2022)

Assessment of Imputation Quality: Comparison of Phasing and Imputation Algorithms in Real Data
por: Stahl, Katharina, et al.
Publicado: (2021)

Identification of Whole-Genome Significant Single Nucleotide Polymorphisms in Candidate Genes Associated With Serum Biochemical Traits in Chinese Holstein Cattle
por: Shi, Kerong, et al.
Publicado: (2020)

Comparison of Genotype Imputation for SNP Array and Low-Coverage Whole-Genome Sequencing Data
por: Deng, Tianyu, et al.
Publicado: (2022)

Integrated Small RNA Sequencing, Transcriptome and GWAS Data Reveal microRNA Regulation in Response to Milk Protein Traits in Chinese Holstein Cattle
por: Cai, Wentao, et al.
Publicado: (2021)

Evaluation of imputation accuracy using the combination of two high-density panels in Nelore beef cattle
por: Bernardes, Priscila Arrigucci, et al.
Publicado: (2019)

Linkage Disequilibrium Estimation of Chinese Beef Simmental Cattle Using High-density SNP Panels
por: Zhu, M., et al.
Publicado: (2013)

Genotype Imputation for Latinos Using the HapMap and 1000 Genomes Project Reference Panels
por: Gao, Xiaoyi, et al.
Publicado: (2012)

BDNF Contributes to the Genetic Variance of Milk Fat Yield in German Holstein Cattle
por: Zielke, Lea G., et al.
Publicado: (2011)

Genome Partitioning of Genetic Variation for Milk Production and Composition Traits in Holstein Cattle
por: Pimentel, Eduardo da Cruz Gouveia, et al.
Publicado: (2011)

A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle
por: Jiang, Jicai, et al.
Publicado: (2019)

Pleiotropic Loci Associated With Foot Disorders and Common Periparturient Diseases in Holstein Cattle
por: Lai, Ellen, et al.
Publicado: (2021)

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2015)

Gene Mapping and Gene-Set Analysis for Milk Fever Incidence in Holstein Dairy Cattle
por: Pacheco, Hendyel A., et al.
Publicado: (2018)

Quantitative Trait Loci Mapping for Lameness Associated Phenotypes in Holstein–Friesian Dairy Cattle
por: Sánchez-Molano, Enrique, et al.
Publicado: (2019)

Genetic and Genomic Analyses of Service Sire Effect on Female Reproductive Traits in Holstein Cattle
por: Chen, Ziwei, et al.
Publicado: (2021)

Evaluation of updated Feed Saved breeding values developed in Australian Holstein dairy cattle
por: Bolormaa, S., et al.
Publicado: (2022)

Genome‐enable prediction for health traits using high‐density SNP panel in US Holstein cattle
por: Lopes, F., et al.
Publicado: (2020)

Exploring milk loss and variability during environmental perturbations across lactation stages as resilience indicators in Holstein cattle
por: Wang, Ao, et al.
Publicado: (2022)

Imputation of high-density genotypes in the Fleckvieh cattle population
por: Pausch, Hubert, et al.
Publicado: (2013)

Amino acids and the regulation of oxidative stress and immune function in dairy cattle
por: Coleman, Danielle N, et al.
Publicado: (2020)

Genome-Wide Association Studies Reveal Susceptibility Loci for Noninfectious Claw Lesions in Holstein Dairy Cattle
por: Lai, Ellen, et al.
Publicado: (2021)

Prevalence of nine genetic defects in Chinese Holstein cattle
por: Khan, Md. Yousuf Ali, et al.
Publicado: (2021)

A Genetic Investigation of Island Jersey Cattle, the Foundation of the Jersey Breed: Comparing Population Structure and Selection to Guernsey, Holstein, and United States Jersey Cattle
por: Huson, Heather J., et al.
Publicado: (2020)

ImputEHR: A Visualization Tool of Imputation for the Prediction of Biomedical Data
por: Zhou, Yi-Hui, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_j8kccgma9fs20jnpsbu1qb9v2o