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The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array

BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic...

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Autores principales: Joo, JiHoon E, Wong, Ee Ming, Baglietto, Laura, Jung, Chol-Hee, Tsimiklis, Helen, Park, Daniel J, Wong, Nicholas C, English, Dallas R, Hopper, John L, Severi, Gianluca, Giles, Graham G, Southey, Melissa C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610215/
https://www.ncbi.nlm.nih.gov/pubmed/23497093
http://dx.doi.org/10.1186/1472-6750-13-23
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author Joo, JiHoon E
Wong, Ee Ming
Baglietto, Laura
Jung, Chol-Hee
Tsimiklis, Helen
Park, Daniel J
Wong, Nicholas C
English, Dallas R
Hopper, John L
Severi, Gianluca
Giles, Graham G
Southey, Melissa C
author_facet Joo, JiHoon E
Wong, Ee Ming
Baglietto, Laura
Jung, Chol-Hee
Tsimiklis, Helen
Park, Daniel J
Wong, Nicholas C
English, Dallas R
Hopper, John L
Severi, Gianluca
Giles, Graham G
Southey, Melissa C
author_sort Joo, JiHoon E
collection PubMed
description BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic applications, particularly at a genome-wide level. RESULTS: In this study, we demonstrate the successful use of DNA isolated from archived dried blood spots for the Infinium HumanMethylation450 Beadchip, along with DNA from matched frozen buffy coats. We obtained high quality and reproducible genome-wide DNA methylation profiles using both sample types. We also report high correlations (r > 0.9907) between DNA obtained from matched dried blood spots and frozen buffy coats, sufficient to distinguish between unrelated individuals. CONCLUSIONS: We, thus, demonstrate that DNA from archived dried blood spots is suitable for genome-wide DNA methylation profiling.
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spelling pubmed-36102152013-03-29 The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array Joo, JiHoon E Wong, Ee Ming Baglietto, Laura Jung, Chol-Hee Tsimiklis, Helen Park, Daniel J Wong, Nicholas C English, Dallas R Hopper, John L Severi, Gianluca Giles, Graham G Southey, Melissa C BMC Biotechnol Research Article BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic applications, particularly at a genome-wide level. RESULTS: In this study, we demonstrate the successful use of DNA isolated from archived dried blood spots for the Infinium HumanMethylation450 Beadchip, along with DNA from matched frozen buffy coats. We obtained high quality and reproducible genome-wide DNA methylation profiles using both sample types. We also report high correlations (r > 0.9907) between DNA obtained from matched dried blood spots and frozen buffy coats, sufficient to distinguish between unrelated individuals. CONCLUSIONS: We, thus, demonstrate that DNA from archived dried blood spots is suitable for genome-wide DNA methylation profiling. BioMed Central 2013-03-15 /pmc/articles/PMC3610215/ /pubmed/23497093 http://dx.doi.org/10.1186/1472-6750-13-23 Text en Copyright ©2013 Joo et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Joo, JiHoon E
Wong, Ee Ming
Baglietto, Laura
Jung, Chol-Hee
Tsimiklis, Helen
Park, Daniel J
Wong, Nicholas C
English, Dallas R
Hopper, John L
Severi, Gianluca
Giles, Graham G
Southey, Melissa C
The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title_full The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title_fullStr The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title_full_unstemmed The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title_short The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
title_sort use of dna from archival dried blood spots with the infinium humanmethylation450 array
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610215/
https://www.ncbi.nlm.nih.gov/pubmed/23497093
http://dx.doi.org/10.1186/1472-6750-13-23
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