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The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610215/ https://www.ncbi.nlm.nih.gov/pubmed/23497093 http://dx.doi.org/10.1186/1472-6750-13-23 |
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author | Joo, JiHoon E Wong, Ee Ming Baglietto, Laura Jung, Chol-Hee Tsimiklis, Helen Park, Daniel J Wong, Nicholas C English, Dallas R Hopper, John L Severi, Gianluca Giles, Graham G Southey, Melissa C |
author_facet | Joo, JiHoon E Wong, Ee Ming Baglietto, Laura Jung, Chol-Hee Tsimiklis, Helen Park, Daniel J Wong, Nicholas C English, Dallas R Hopper, John L Severi, Gianluca Giles, Graham G Southey, Melissa C |
author_sort | Joo, JiHoon E |
collection | PubMed |
description | BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic applications, particularly at a genome-wide level. RESULTS: In this study, we demonstrate the successful use of DNA isolated from archived dried blood spots for the Infinium HumanMethylation450 Beadchip, along with DNA from matched frozen buffy coats. We obtained high quality and reproducible genome-wide DNA methylation profiles using both sample types. We also report high correlations (r > 0.9907) between DNA obtained from matched dried blood spots and frozen buffy coats, sufficient to distinguish between unrelated individuals. CONCLUSIONS: We, thus, demonstrate that DNA from archived dried blood spots is suitable for genome-wide DNA methylation profiling. |
format | Online Article Text |
id | pubmed-3610215 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-36102152013-03-29 The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array Joo, JiHoon E Wong, Ee Ming Baglietto, Laura Jung, Chol-Hee Tsimiklis, Helen Park, Daniel J Wong, Nicholas C English, Dallas R Hopper, John L Severi, Gianluca Giles, Graham G Southey, Melissa C BMC Biotechnol Research Article BACKGROUND: Dried blood (Guthrie card) spots provide an efficient way to collect and store blood specimens. DNA from this source has been utilised for a number of molecular analyses including genome-wide association studies, but only few studies have tested the feasibility of using it for epigenetic applications, particularly at a genome-wide level. RESULTS: In this study, we demonstrate the successful use of DNA isolated from archived dried blood spots for the Infinium HumanMethylation450 Beadchip, along with DNA from matched frozen buffy coats. We obtained high quality and reproducible genome-wide DNA methylation profiles using both sample types. We also report high correlations (r > 0.9907) between DNA obtained from matched dried blood spots and frozen buffy coats, sufficient to distinguish between unrelated individuals. CONCLUSIONS: We, thus, demonstrate that DNA from archived dried blood spots is suitable for genome-wide DNA methylation profiling. BioMed Central 2013-03-15 /pmc/articles/PMC3610215/ /pubmed/23497093 http://dx.doi.org/10.1186/1472-6750-13-23 Text en Copyright ©2013 Joo et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Joo, JiHoon E Wong, Ee Ming Baglietto, Laura Jung, Chol-Hee Tsimiklis, Helen Park, Daniel J Wong, Nicholas C English, Dallas R Hopper, John L Severi, Gianluca Giles, Graham G Southey, Melissa C The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title | The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title_full | The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title_fullStr | The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title_full_unstemmed | The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title_short | The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array |
title_sort | use of dna from archival dried blood spots with the infinium humanmethylation450 array |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610215/ https://www.ncbi.nlm.nih.gov/pubmed/23497093 http://dx.doi.org/10.1186/1472-6750-13-23 |
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