The future of DNA sequence archiving

Archives operating under the International Nucleotide Sequence Database Collaboration currently preserve all submitted sequences equally, but rapid increases in the rate of global sequence production will soon require differentiated treatment of DNA sequences submitted for archiving. Here, we propos...

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Detalles Bibliográficos
Autores principales: Cochrane, Guy, Cook, Charles E, Birney, Ewan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617450/
https://www.ncbi.nlm.nih.gov/pubmed/23587147
http://dx.doi.org/10.1186/2047-217X-1-2
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author Cochrane, Guy
Cook, Charles E
Birney, Ewan
author_facet Cochrane, Guy
Cook, Charles E
Birney, Ewan
author_sort Cochrane, Guy
collection PubMed
description Archives operating under the International Nucleotide Sequence Database Collaboration currently preserve all submitted sequences equally, but rapid increases in the rate of global sequence production will soon require differentiated treatment of DNA sequences submitted for archiving. Here, we propose a graded system in which the ease of reproduction of a sequencing-based experiment and the relative availability of a sample for resequencing define the level of lossy compression applied to stored data.
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spelling pubmed-36174502013-04-11 The future of DNA sequence archiving Cochrane, Guy Cook, Charles E Birney, Ewan Gigascience Review Archives operating under the International Nucleotide Sequence Database Collaboration currently preserve all submitted sequences equally, but rapid increases in the rate of global sequence production will soon require differentiated treatment of DNA sequences submitted for archiving. Here, we propose a graded system in which the ease of reproduction of a sequencing-based experiment and the relative availability of a sample for resequencing define the level of lossy compression applied to stored data. BioMed Central 2012-07-12 /pmc/articles/PMC3617450/ /pubmed/23587147 http://dx.doi.org/10.1186/2047-217X-1-2 Text en Copyright © 2012 Cochrane ; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Cochrane, Guy
Cook, Charles E
Birney, Ewan
The future of DNA sequence archiving
title The future of DNA sequence archiving
title_full The future of DNA sequence archiving
title_fullStr The future of DNA sequence archiving
title_full_unstemmed The future of DNA sequence archiving
title_short The future of DNA sequence archiving
title_sort future of dna sequence archiving
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617450/
https://www.ncbi.nlm.nih.gov/pubmed/23587147
http://dx.doi.org/10.1186/2047-217X-1-2
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