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From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

Growth and remodelling impact the network topology of complex systems, yet a general theory explaining how new links arise between existing nodes has been lacking, and little is known about the topological properties that facilitate link-prediction. Here we investigate the extent to which the connec...

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Autores principales: Cannistraci, Carlo Vittorio, Alanis-Lobato, Gregorio, Ravasi, Timothy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619147/
https://www.ncbi.nlm.nih.gov/pubmed/23563395
http://dx.doi.org/10.1038/srep01613
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author Cannistraci, Carlo Vittorio
Alanis-Lobato, Gregorio
Ravasi, Timothy
author_facet Cannistraci, Carlo Vittorio
Alanis-Lobato, Gregorio
Ravasi, Timothy
author_sort Cannistraci, Carlo Vittorio
collection PubMed
description Growth and remodelling impact the network topology of complex systems, yet a general theory explaining how new links arise between existing nodes has been lacking, and little is known about the topological properties that facilitate link-prediction. Here we investigate the extent to which the connectivity evolution of a network might be predicted by mere topological features. We show how a link/community-based strategy triggers substantial prediction improvements because it accounts for the singular topology of several real networks organised in multiple local communities - a tendency here named local-community-paradigm (LCP). We observe that LCP networks are mainly formed by weak interactions and characterise heterogeneous and dynamic systems that use self-organisation as a major adaptation strategy. These systems seem designed for global delivery of information and processing via multiple local modules. Conversely, non-LCP networks have steady architectures formed by strong interactions, and seem designed for systems in which information/energy storage is crucial.
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spelling pubmed-36191472013-04-09 From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks Cannistraci, Carlo Vittorio Alanis-Lobato, Gregorio Ravasi, Timothy Sci Rep Article Growth and remodelling impact the network topology of complex systems, yet a general theory explaining how new links arise between existing nodes has been lacking, and little is known about the topological properties that facilitate link-prediction. Here we investigate the extent to which the connectivity evolution of a network might be predicted by mere topological features. We show how a link/community-based strategy triggers substantial prediction improvements because it accounts for the singular topology of several real networks organised in multiple local communities - a tendency here named local-community-paradigm (LCP). We observe that LCP networks are mainly formed by weak interactions and characterise heterogeneous and dynamic systems that use self-organisation as a major adaptation strategy. These systems seem designed for global delivery of information and processing via multiple local modules. Conversely, non-LCP networks have steady architectures formed by strong interactions, and seem designed for systems in which information/energy storage is crucial. Nature Publishing Group 2013-04-08 /pmc/articles/PMC3619147/ /pubmed/23563395 http://dx.doi.org/10.1038/srep01613 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareALike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Cannistraci, Carlo Vittorio
Alanis-Lobato, Gregorio
Ravasi, Timothy
From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title_full From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title_fullStr From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title_full_unstemmed From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title_short From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
title_sort from link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619147/
https://www.ncbi.nlm.nih.gov/pubmed/23563395
http://dx.doi.org/10.1038/srep01613
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