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The Effect of Single Recombination Events on Coalescent Tree Height and Shape
The coalescent with recombination is a fundamental model to describe the genealogical history of DNA sequence samples from recombining organisms. Considering recombination as a process which acts along genomes and which creates sequence segments with shared ancestry, we study the influence of single...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3620475/ https://www.ncbi.nlm.nih.gov/pubmed/23593168 http://dx.doi.org/10.1371/journal.pone.0060123 |
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author | Ferretti, Luca Disanto, Filippo Wiehe, Thomas |
author_facet | Ferretti, Luca Disanto, Filippo Wiehe, Thomas |
author_sort | Ferretti, Luca |
collection | PubMed |
description | The coalescent with recombination is a fundamental model to describe the genealogical history of DNA sequence samples from recombining organisms. Considering recombination as a process which acts along genomes and which creates sequence segments with shared ancestry, we study the influence of single recombination events upon tree characteristics of the coalescent. We focus on properties such as tree height and tree balance and quantify analytically the changes in these quantities incurred by recombination in terms of probability distributions. We find that changes in tree topology are often relatively mild under conditions of neutral evolution, while changes in tree height are on average quite large. Our results add to a quantitative understanding of the spatial coalescent and provide the neutral reference to which the impact by other evolutionary scenarios, for instance tree distortion by selective sweeps, can be compared. |
format | Online Article Text |
id | pubmed-3620475 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-36204752013-04-16 The Effect of Single Recombination Events on Coalescent Tree Height and Shape Ferretti, Luca Disanto, Filippo Wiehe, Thomas PLoS One Research Article The coalescent with recombination is a fundamental model to describe the genealogical history of DNA sequence samples from recombining organisms. Considering recombination as a process which acts along genomes and which creates sequence segments with shared ancestry, we study the influence of single recombination events upon tree characteristics of the coalescent. We focus on properties such as tree height and tree balance and quantify analytically the changes in these quantities incurred by recombination in terms of probability distributions. We find that changes in tree topology are often relatively mild under conditions of neutral evolution, while changes in tree height are on average quite large. Our results add to a quantitative understanding of the spatial coalescent and provide the neutral reference to which the impact by other evolutionary scenarios, for instance tree distortion by selective sweeps, can be compared. Public Library of Science 2013-04-08 /pmc/articles/PMC3620475/ /pubmed/23593168 http://dx.doi.org/10.1371/journal.pone.0060123 Text en © 2013 Ferretti et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Ferretti, Luca Disanto, Filippo Wiehe, Thomas The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title | The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title_full | The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title_fullStr | The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title_full_unstemmed | The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title_short | The Effect of Single Recombination Events on Coalescent Tree Height and Shape |
title_sort | effect of single recombination events on coalescent tree height and shape |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3620475/ https://www.ncbi.nlm.nih.gov/pubmed/23593168 http://dx.doi.org/10.1371/journal.pone.0060123 |
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