Cargando…
Horizontal transfer of OC1 transposons in the Tasmanian devil
BACKGROUND: There is growing recognition that horizontal DNA transfer, a process known to be common in prokaryotes, is also a significant source of genomic variation in eukaryotes. Horizontal transfer of transposable elements (HTT) may be especially prevalent in eukaryotes given the inherent mobilit...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621081/ https://www.ncbi.nlm.nih.gov/pubmed/23445260 http://dx.doi.org/10.1186/1471-2164-14-134 |
_version_ | 1782265659601715200 |
---|---|
author | Gilbert, Clement Waters, Paul Feschotte, Cedric Schaack, Sarah |
author_facet | Gilbert, Clement Waters, Paul Feschotte, Cedric Schaack, Sarah |
author_sort | Gilbert, Clement |
collection | PubMed |
description | BACKGROUND: There is growing recognition that horizontal DNA transfer, a process known to be common in prokaryotes, is also a significant source of genomic variation in eukaryotes. Horizontal transfer of transposable elements (HTT) may be especially prevalent in eukaryotes given the inherent mobility, widespread occurrence, and prolific abundance of these elements in many eukaryotic genomes. RESULTS: Here, we provide evidence for a new case of HTT of the transposon family OposCharlie1 (OC1) in the Tasmanian devil, Sarcophilus harrisii. Bioinformatic analyses of OC1 sequences in the Tasmanian devil genome suggest that this transposon infiltrated the common ancestor of the Dasyuridae family ~17 million years ago. This estimate is corroborated by a PCR-based screen for the presence/absence of this family in Tasmanian devils and closely-related species. CONCLUSIONS: This case of HTT is the first to be reported in dasyurids. It brings the number of animal lineages independently invaded by OC1 to 12, and adds a fourth continent to the pandemic-like pattern of invasion of this transposon. In the context of these data, we discuss the evolutionary history of this transposon family and its potential impact on the diversification of marsupials. |
format | Online Article Text |
id | pubmed-3621081 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-36210812013-04-10 Horizontal transfer of OC1 transposons in the Tasmanian devil Gilbert, Clement Waters, Paul Feschotte, Cedric Schaack, Sarah BMC Genomics Research Article BACKGROUND: There is growing recognition that horizontal DNA transfer, a process known to be common in prokaryotes, is also a significant source of genomic variation in eukaryotes. Horizontal transfer of transposable elements (HTT) may be especially prevalent in eukaryotes given the inherent mobility, widespread occurrence, and prolific abundance of these elements in many eukaryotic genomes. RESULTS: Here, we provide evidence for a new case of HTT of the transposon family OposCharlie1 (OC1) in the Tasmanian devil, Sarcophilus harrisii. Bioinformatic analyses of OC1 sequences in the Tasmanian devil genome suggest that this transposon infiltrated the common ancestor of the Dasyuridae family ~17 million years ago. This estimate is corroborated by a PCR-based screen for the presence/absence of this family in Tasmanian devils and closely-related species. CONCLUSIONS: This case of HTT is the first to be reported in dasyurids. It brings the number of animal lineages independently invaded by OC1 to 12, and adds a fourth continent to the pandemic-like pattern of invasion of this transposon. In the context of these data, we discuss the evolutionary history of this transposon family and its potential impact on the diversification of marsupials. BioMed Central 2013-02-27 /pmc/articles/PMC3621081/ /pubmed/23445260 http://dx.doi.org/10.1186/1471-2164-14-134 Text en Copyright © 2013 Gilbert et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Gilbert, Clement Waters, Paul Feschotte, Cedric Schaack, Sarah Horizontal transfer of OC1 transposons in the Tasmanian devil |
title | Horizontal transfer of OC1 transposons in the Tasmanian devil |
title_full | Horizontal transfer of OC1 transposons in the Tasmanian devil |
title_fullStr | Horizontal transfer of OC1 transposons in the Tasmanian devil |
title_full_unstemmed | Horizontal transfer of OC1 transposons in the Tasmanian devil |
title_short | Horizontal transfer of OC1 transposons in the Tasmanian devil |
title_sort | horizontal transfer of oc1 transposons in the tasmanian devil |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621081/ https://www.ncbi.nlm.nih.gov/pubmed/23445260 http://dx.doi.org/10.1186/1471-2164-14-134 |
work_keys_str_mv | AT gilbertclement horizontaltransferofoc1transposonsinthetasmaniandevil AT waterspaul horizontaltransferofoc1transposonsinthetasmaniandevil AT feschottecedric horizontaltransferofoc1transposonsinthetasmaniandevil AT schaacksarah horizontaltransferofoc1transposonsinthetasmaniandevil |