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Application of whole slide image markup and annotation for pathologist knowledge capture
OBJECTIVE: The ability to transfer image markup and annotation data from one scanned image of a slide to a newly acquired image of the same slide within a single vendor platform was investigated. The goal was to study the ability to use image markup and annotation data files as a mechanism to captur...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624705/ https://www.ncbi.nlm.nih.gov/pubmed/23599902 http://dx.doi.org/10.4103/2153-3539.107953 |
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author | Campbell, Walter S. Foster, Kirk W. Hinrichs, Steven H. |
author_facet | Campbell, Walter S. Foster, Kirk W. Hinrichs, Steven H. |
author_sort | Campbell, Walter S. |
collection | PubMed |
description | OBJECTIVE: The ability to transfer image markup and annotation data from one scanned image of a slide to a newly acquired image of the same slide within a single vendor platform was investigated. The goal was to study the ability to use image markup and annotation data files as a mechanism to capture and retain pathologist knowledge without retaining the entire whole slide image (WSI) file. METHODS: Accepted mathematical principles were investigated as a method to overcome variations in scans of the same glass slide and to accurately associate image markup and annotation data across different WSI of the same glass slide. Trilateration was used to link fixed points within the image and slide to the placement of markups and annotations of the image in a metadata file. RESULTS: Variation in markup and annotation placement between WSI of the same glass slide was reduced from over 80 μ to less than 4 μ in the x-axis and from 17 μ to 6 μ in the y-axis (P < 0.025). CONCLUSION: This methodology allows for the creation of a highly reproducible image library of histopathology images and interpretations for educational and research use. |
format | Online Article Text |
id | pubmed-3624705 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-36247052013-04-18 Application of whole slide image markup and annotation for pathologist knowledge capture Campbell, Walter S. Foster, Kirk W. Hinrichs, Steven H. J Pathol Inform Original Article OBJECTIVE: The ability to transfer image markup and annotation data from one scanned image of a slide to a newly acquired image of the same slide within a single vendor platform was investigated. The goal was to study the ability to use image markup and annotation data files as a mechanism to capture and retain pathologist knowledge without retaining the entire whole slide image (WSI) file. METHODS: Accepted mathematical principles were investigated as a method to overcome variations in scans of the same glass slide and to accurately associate image markup and annotation data across different WSI of the same glass slide. Trilateration was used to link fixed points within the image and slide to the placement of markups and annotations of the image in a metadata file. RESULTS: Variation in markup and annotation placement between WSI of the same glass slide was reduced from over 80 μ to less than 4 μ in the x-axis and from 17 μ to 6 μ in the y-axis (P < 0.025). CONCLUSION: This methodology allows for the creation of a highly reproducible image library of histopathology images and interpretations for educational and research use. Medknow Publications & Media Pvt Ltd 2013-02-28 /pmc/articles/PMC3624705/ /pubmed/23599902 http://dx.doi.org/10.4103/2153-3539.107953 Text en Copyright: © 2013 Campbell WS. http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Original Article Campbell, Walter S. Foster, Kirk W. Hinrichs, Steven H. Application of whole slide image markup and annotation for pathologist knowledge capture |
title | Application of whole slide image markup and annotation for pathologist knowledge capture |
title_full | Application of whole slide image markup and annotation for pathologist knowledge capture |
title_fullStr | Application of whole slide image markup and annotation for pathologist knowledge capture |
title_full_unstemmed | Application of whole slide image markup and annotation for pathologist knowledge capture |
title_short | Application of whole slide image markup and annotation for pathologist knowledge capture |
title_sort | application of whole slide image markup and annotation for pathologist knowledge capture |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624705/ https://www.ncbi.nlm.nih.gov/pubmed/23599902 http://dx.doi.org/10.4103/2153-3539.107953 |
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