Cargando…
Set-level threshold-free tests on the intrinsic volumes of SPMs
Conventionally, set-level inference on statistical parametric maps (SPMs) is based on the topological features of an excursion set above some threshold—for example, the number of clusters or Euler characteristic. The expected Euler characteristic—under the null hypothesis—can be predicted from an in...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academic Press
2013
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625125/ https://www.ncbi.nlm.nih.gov/pubmed/23246858 http://dx.doi.org/10.1016/j.neuroimage.2012.11.046 |
_version_ | 1782266069880143872 |
---|---|
author | Barnes, Gareth R. Ridgway, Gerard R. Flandin, Guillaume Woolrich, Mark Friston, Karl |
author_facet | Barnes, Gareth R. Ridgway, Gerard R. Flandin, Guillaume Woolrich, Mark Friston, Karl |
author_sort | Barnes, Gareth R. |
collection | PubMed |
description | Conventionally, set-level inference on statistical parametric maps (SPMs) is based on the topological features of an excursion set above some threshold—for example, the number of clusters or Euler characteristic. The expected Euler characteristic—under the null hypothesis—can be predicted from an intrinsic measure or volume of the SPM, such as the resel counts or the Lipschitz–Killing curvatures (LKC). We propose a new approach that performs a null hypothesis omnibus test on an SPM, by testing whether its intrinsic volume (described by LKC coefficients) is different from the volume of the underlying residual fields: intuitively, whether the number of peaks in the statistical field (testing for signal) and the residual fields (noise) are consistent or not. Crucially, this new test requires no arbitrary feature-defining threshold but is nevertheless sensitive to distributed or spatially extended patterns. We show the similarities between our approach and conventional topological inference—in terms of false positive rate control and sensitivity to treatment effects—in two and three dimensional simulations. The test consistently improves on classical approaches for moderate (> 20) degrees of freedom. We also demonstrate the application to real data and illustrate the comparison of the expected and observed Euler characteristics over the complete threshold range. |
format | Online Article Text |
id | pubmed-3625125 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Academic Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-36251252013-04-15 Set-level threshold-free tests on the intrinsic volumes of SPMs Barnes, Gareth R. Ridgway, Gerard R. Flandin, Guillaume Woolrich, Mark Friston, Karl Neuroimage Article Conventionally, set-level inference on statistical parametric maps (SPMs) is based on the topological features of an excursion set above some threshold—for example, the number of clusters or Euler characteristic. The expected Euler characteristic—under the null hypothesis—can be predicted from an intrinsic measure or volume of the SPM, such as the resel counts or the Lipschitz–Killing curvatures (LKC). We propose a new approach that performs a null hypothesis omnibus test on an SPM, by testing whether its intrinsic volume (described by LKC coefficients) is different from the volume of the underlying residual fields: intuitively, whether the number of peaks in the statistical field (testing for signal) and the residual fields (noise) are consistent or not. Crucially, this new test requires no arbitrary feature-defining threshold but is nevertheless sensitive to distributed or spatially extended patterns. We show the similarities between our approach and conventional topological inference—in terms of false positive rate control and sensitivity to treatment effects—in two and three dimensional simulations. The test consistently improves on classical approaches for moderate (> 20) degrees of freedom. We also demonstrate the application to real data and illustrate the comparison of the expected and observed Euler characteristics over the complete threshold range. Academic Press 2013-03 /pmc/articles/PMC3625125/ /pubmed/23246858 http://dx.doi.org/10.1016/j.neuroimage.2012.11.046 Text en © 2013 Elsevier Inc. https://creativecommons.org/licenses/by/3.0/ Open Access under CC BY 3.0 (https://creativecommons.org/licenses/by/3.0/) license |
spellingShingle | Article Barnes, Gareth R. Ridgway, Gerard R. Flandin, Guillaume Woolrich, Mark Friston, Karl Set-level threshold-free tests on the intrinsic volumes of SPMs |
title | Set-level threshold-free tests on the intrinsic volumes of SPMs |
title_full | Set-level threshold-free tests on the intrinsic volumes of SPMs |
title_fullStr | Set-level threshold-free tests on the intrinsic volumes of SPMs |
title_full_unstemmed | Set-level threshold-free tests on the intrinsic volumes of SPMs |
title_short | Set-level threshold-free tests on the intrinsic volumes of SPMs |
title_sort | set-level threshold-free tests on the intrinsic volumes of spms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625125/ https://www.ncbi.nlm.nih.gov/pubmed/23246858 http://dx.doi.org/10.1016/j.neuroimage.2012.11.046 |
work_keys_str_mv | AT barnesgarethr setlevelthresholdfreetestsontheintrinsicvolumesofspms AT ridgwaygerardr setlevelthresholdfreetestsontheintrinsicvolumesofspms AT flandinguillaume setlevelthresholdfreetestsontheintrinsicvolumesofspms AT woolrichmark setlevelthresholdfreetestsontheintrinsicvolumesofspms AT fristonkarl setlevelthresholdfreetestsontheintrinsicvolumesofspms |