Cargando…

Three multiplex snapshot assays for SNP genotyping in candidate innate immune genes

BACKGROUND: Innate immune system is the first line of research when studying immune response to diverse infections and autoimmune/inflammatory diseases. This immune response has been reported to be genetically diverse, due to polymorphisms coded by different genes. For this reason, our purpose was t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Esteves, Lisa M, Bulhões, Sara M, Brilhante, Maria J, Mota-Vieira, Luisa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Technical Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3626843/ https://www.ncbi.nlm.nih.gov/pubmed/23390954 http://dx.doi.org/10.1186/1756-0500-6-54

Ejemplares similares

Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success
por: Humble, Emily, et al.
Publicado: (2016)

A SNaPshot assay for the rapid and simple detection of four common hotspot codon mutations in the PIK3CA gene
por: Hurst, Carolyn D, et al.
Publicado: (2009)

SNP_tools: A compact tool package for analysis and conversion of genotype data for MS-Excel
por: Chen, Bowang, et al.
Publicado: (2009)

An efficient multiplex genotyping approach for detecting the major worldwide human Y-chromosome haplogroups
por: van Oven, Mannis, et al.
Publicado: (2011)

MAPD: a probe design suite for multiplex ligation-dependent probe amplification assays
por: Zhi, Jizu
Publicado: (2010)

Rapid screening of innate immune gene expression in zebrafish using reverse transcription - multiplex ligation-dependent probe amplification
por: Rotman, Janneke, et al.
Publicado: (2011)

Multiplexed measurements of gene signatures in different analytes using the Nanostring nCounter™ Assay System
por: Malkov, Vladislav A, et al.
Publicado: (2009)

Development of a rapid multiplex SSR genotyping method to study populations of the fungal plant pathogen Zymoseptoria tritici
por: Gautier, Angélique, et al.
Publicado: (2014)

A rapid genotyping method for an obligate fungal pathogen, Puccinia striiformis f.sp. tritici, based on DNA extraction from infected leaf and Multiplex PCR genotyping
por: Ali, Sajid, et al.
Publicado: (2011)

Computational tradeoffs in multiplex PCR assay design for SNP genotyping
por: Rachlin, John, et al.
Publicado: (2005)

UAV-Based Hyperspectral Monitoring Using Push-Broom and Snapshot Sensors: A Multisite Assessment for Precision Viticulture Applications
por: Sousa, Joaquim J., et al.
Publicado: (2022)

The coding region of the UFGT gene is a source of diagnostic SNP markers that allow single-locus DNA genotyping for the assessment of cultivar identity and ancestry in grapevine (Vitis vinifera L.)
por: Nicolè, Silvia, et al.
Publicado: (2013)

Multiplexing Iduronate-2-Sulphatase (MPS-II) into a 7-Plex Lysosomal Storage Disorder MS/MS Assay Using Cold-Induced Phase Separation
por: Courtney, Elya, et al.
Publicado: (2023)

Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features
por: Jayashree, B, et al.
Publicado: (2009)

Novel approach for deriving genome wide SNP analysis data from archived blood spots
por: Fowler, Katie E, et al.
Publicado: (2012)

A method for generating highly multiplexed ChIP-seq libraries
por: Ford, Ethan, et al.
Publicado: (2014)

A real-time PCR assay with improved specificity for detection and discrimination of all clinically relevant Bordetella species by the presence and distribution of three Insertion Sequence elements
por: Roorda, Lieuwe, et al.
Publicado: (2011)

Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration
por: Deelen, Patrick, et al.
Publicado: (2014)

A CD45-based barcoding approach to multiplex mass-cytometry (CyTOF)
por: Lai, Liyun, et al.
Publicado: (2015)

Comparison of three PCR-based assays for SNP genotyping in plants
por: Broccanello, Chiara, et al.
Publicado: (2018)

Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays
por: Smith, Edward M., et al.
Publicado: (2007)

PeakSeeker: a program for interpreting genotypes of mononucleotide repeats
por: Thompson, James M, et al.
Publicado: (2009)

Multiplex preamplification of specific cDNA targets prior to gene expression analysis by TaqMan Arrays
por: Mengual, Lourdes, et al.
Publicado: (2008)

Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping
por: Hayden, Matthew J, et al.
Publicado: (2008)

CRISPR interference-guided multiplex repression of endogenous competing pathway genes for redirecting metabolic flux in Escherichia coli
por: Kim, Seong Keun, et al.
Publicado: (2017)

Rapid assay to assess colonization patterns following in-vivo probiotic ingestion
por: Tobin, Jacinta M, et al.
Publicado: (2013)

Gigwa—Genotype investigator for genome-wide analyses
por: Sempéré, Guilhem, et al.
Publicado: (2016)

SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
por: Wang, Wenxi, et al.
Publicado: (2020)

A simple way to evaluate self-designed probes for tumor specific Multiplex Ligation-dependent Probe Amplification (MLPA)
por: Pedersen, Kristina, et al.
Publicado: (2010)

Multiplexed reverse transcription real-time polymerase chain reaction for simultaneous detection of Mayaro, Oropouche, and Oropouche-like viruses
por: Naveca, Felipe Gomes, et al.
Publicado: (2017)

Design and optimization of a 16S microbial qPCR multiplex for the presumptive identification of feces, saliva, vaginal and menstrual secretions
por: Lewis, Carolyn, et al.
Publicado: (2022)

Interference of flavonoids with enzymatic assays for the determination of free fatty acid and triglyceride levels
por: Hoek-van den Hil, Elise F., et al.
Publicado: (2011)

Miniaturized optical chemosensor for flow-based assays
por: Pokrzywnicka, Marta, et al.
Publicado: (2010)

Miniaturization of the Clonogenic Assay Using Confluence Measurement
por: Mayr, Christian, et al.
Publicado: (2018)

SNPest: a probabilistic graphical model for estimating genotypes
por: Lindgreen, Stinus, et al.
Publicado: (2014)

Gigwa v2—Extended and improved genotype investigator
por: Sempéré, Guilhem, et al.
Publicado: (2019)

Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
por: Rancurel, Corinne, et al.
Publicado: (2017)

Quantitative imaging assay for NF-κB nuclear translocation in primary human macrophages
por: Noursadeghi, Mahdad, et al.
Publicado: (2008)

CandiMeth: Powerful yet simple visualization and quantification of DNA methylation at candidate genes
por: Thursby, Sara-Jayne, et al.
Publicado: (2020)

Genotyping of black grouse MHC class II B using reference Strand-Mediated Conformational Analysis (RSCA)
por: Strand, Tanja M, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_ckgrb0pcgpaqf7ble1rdf3599p