Cargando…

Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate

Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporula...

Descripción completa

Detalles Bibliográficos
Autores principales: Schultz, Daniel, Lu, Mingyang, Stavropoulos, Trevor, Onuchic, Jose', Ben-Jacob, Eshel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627974/
https://www.ncbi.nlm.nih.gov/pubmed/23591544
http://dx.doi.org/10.1038/srep01668
_version_ 1782266364804726784
author Schultz, Daniel
Lu, Mingyang
Stavropoulos, Trevor
Onuchic, Jose'
Ben-Jacob, Eshel
author_facet Schultz, Daniel
Lu, Mingyang
Stavropoulos, Trevor
Onuchic, Jose'
Ben-Jacob, Eshel
author_sort Schultz, Daniel
collection PubMed
description Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporulation timer whose clock rate is regulated by cell stress and population stress. 3) A decision gate that is coupled to the timer via a special repressilator-like loop. We show that the distinct circuit architecture of this gate leads to special dynamics and noise management characteristics: The gate opens a time-window of opportunity for competence transitions during which it generates oscillations that are turned into a chain of transition opportunities – each oscillation opens a short interval with high transition probability. The special architecture of the gate also leads to filtering of external noise and robustness against internal noise and variations in the circuit parameters.
format Online
Article
Text
id pubmed-3627974
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-36279742013-04-17 Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate Schultz, Daniel Lu, Mingyang Stavropoulos, Trevor Onuchic, Jose' Ben-Jacob, Eshel Sci Rep Article Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporulation timer whose clock rate is regulated by cell stress and population stress. 3) A decision gate that is coupled to the timer via a special repressilator-like loop. We show that the distinct circuit architecture of this gate leads to special dynamics and noise management characteristics: The gate opens a time-window of opportunity for competence transitions during which it generates oscillations that are turned into a chain of transition opportunities – each oscillation opens a short interval with high transition probability. The special architecture of the gate also leads to filtering of external noise and robustness against internal noise and variations in the circuit parameters. Nature Publishing Group 2013-04-17 /pmc/articles/PMC3627974/ /pubmed/23591544 http://dx.doi.org/10.1038/srep01668 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Article
Schultz, Daniel
Lu, Mingyang
Stavropoulos, Trevor
Onuchic, Jose'
Ben-Jacob, Eshel
Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title_full Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title_fullStr Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title_full_unstemmed Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title_short Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
title_sort turning oscillations into opportunities: lessons from a bacterial decision gate
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627974/
https://www.ncbi.nlm.nih.gov/pubmed/23591544
http://dx.doi.org/10.1038/srep01668
work_keys_str_mv AT schultzdaniel turningoscillationsintoopportunitieslessonsfromabacterialdecisiongate
AT lumingyang turningoscillationsintoopportunitieslessonsfromabacterialdecisiongate
AT stavropoulostrevor turningoscillationsintoopportunitieslessonsfromabacterialdecisiongate
AT onuchicjose turningoscillationsintoopportunitieslessonsfromabacterialdecisiongate
AT benjacobeshel turningoscillationsintoopportunitieslessonsfromabacterialdecisiongate