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Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate
Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporula...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627974/ https://www.ncbi.nlm.nih.gov/pubmed/23591544 http://dx.doi.org/10.1038/srep01668 |
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author | Schultz, Daniel Lu, Mingyang Stavropoulos, Trevor Onuchic, Jose' Ben-Jacob, Eshel |
author_facet | Schultz, Daniel Lu, Mingyang Stavropoulos, Trevor Onuchic, Jose' Ben-Jacob, Eshel |
author_sort | Schultz, Daniel |
collection | PubMed |
description | Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporulation timer whose clock rate is regulated by cell stress and population stress. 3) A decision gate that is coupled to the timer via a special repressilator-like loop. We show that the distinct circuit architecture of this gate leads to special dynamics and noise management characteristics: The gate opens a time-window of opportunity for competence transitions during which it generates oscillations that are turned into a chain of transition opportunities – each oscillation opens a short interval with high transition probability. The special architecture of the gate also leads to filtering of external noise and robustness against internal noise and variations in the circuit parameters. |
format | Online Article Text |
id | pubmed-3627974 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-36279742013-04-17 Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate Schultz, Daniel Lu, Mingyang Stavropoulos, Trevor Onuchic, Jose' Ben-Jacob, Eshel Sci Rep Article Sporulation vs. competence provides a prototypic example of collective cell fate determination. The decision is performed by the action of three modules: 1) A stochastic competence switch whose transition probability is regulated by population density, population stress and cell stress. 2) A sporulation timer whose clock rate is regulated by cell stress and population stress. 3) A decision gate that is coupled to the timer via a special repressilator-like loop. We show that the distinct circuit architecture of this gate leads to special dynamics and noise management characteristics: The gate opens a time-window of opportunity for competence transitions during which it generates oscillations that are turned into a chain of transition opportunities – each oscillation opens a short interval with high transition probability. The special architecture of the gate also leads to filtering of external noise and robustness against internal noise and variations in the circuit parameters. Nature Publishing Group 2013-04-17 /pmc/articles/PMC3627974/ /pubmed/23591544 http://dx.doi.org/10.1038/srep01668 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Article Schultz, Daniel Lu, Mingyang Stavropoulos, Trevor Onuchic, Jose' Ben-Jacob, Eshel Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title | Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title_full | Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title_fullStr | Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title_full_unstemmed | Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title_short | Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate |
title_sort | turning oscillations into opportunities: lessons from a bacterial decision gate |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627974/ https://www.ncbi.nlm.nih.gov/pubmed/23591544 http://dx.doi.org/10.1038/srep01668 |
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