Cargando…

Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study

BACKGROUND: Susceptibility to and severity of ankylosing spondylitis (AS) are largely genetically determined. PPARGC1B, RUNX3 and TBKBP1 have recently been found to be associated with AS in patients of western European descent. Our purpose is to examine the influence of PPARGC1B, RUNX3 and TBKBP1 po...

Descripción completa

Detalles Bibliográficos
Autores principales: Lian, Zijian, Chai, Wei, Shi, Lewis L., Chen, Chao, Liu, Jingyi, Wang, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630117/
https://www.ncbi.nlm.nih.gov/pubmed/23637848
http://dx.doi.org/10.1371/journal.pone.0061527
_version_ 1782266659011035136
author Lian, Zijian
Chai, Wei
Shi, Lewis L.
Chen, Chao
Liu, Jingyi
Wang, Yan
author_facet Lian, Zijian
Chai, Wei
Shi, Lewis L.
Chen, Chao
Liu, Jingyi
Wang, Yan
author_sort Lian, Zijian
collection PubMed
description BACKGROUND: Susceptibility to and severity of ankylosing spondylitis (AS) are largely genetically determined. PPARGC1B, RUNX3 and TBKBP1 have recently been found to be associated with AS in patients of western European descent. Our purpose is to examine the influence of PPARGC1B, RUNX3 and TBKBP1 polymorphisms on the susceptibility to and the severity of ankylosing spondylitis in Chinese ethnic majority Han population. METHODS: Blood samples are drawn from 396 AS patients and 404 unrelated healthy controls. All the patients and the controls are Han Chinese and the patients are HLA-B27 positive. The AS patients are classified based on the severity of the disease. Twelve tag single nucleotide polymorphisms (tagSNPs) in PPARGC1B, RUNX3 and TBKBP1 are selected and genotyped. Frequencies of different genotypes and alleles are analyzed among the different severity AS patients and the controls. RESULTS: After Bonferroni correction, the rs7379457 SNP in PPARGC1B shows significant difference when comparing all AS patients to controls (p = 0.005). This SNP also shows significant difference when comparing normal AS patients to controls (p = 0.002). The rs1395621 SNP in RUNX3 shows significant difference when comparing severe AS patients to controls (p = 0.007). The rs9438876 SNP in RUNX3 shows significant difference when comparing normal AS patients to controls (p = 0.007). The rs8070463 SNP in TBKBP1 shows significant difference in genotype distribution when comparing severe AS patients to controls (p = 0.003). CONCLUSIONS: The rs7379457 SNP in PPARGC1B is related to susceptibility to AS in Chinese Han population. The rs7379457 SNP in PPARGC1B, the rs1395621 and rs9438876 SNPs in RUNX3, and the rs8070463 SNP in TBKBP1 are related to the severity of AS in Chinese Han population.
format Online
Article
Text
id pubmed-3630117
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-36301172013-05-01 Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study Lian, Zijian Chai, Wei Shi, Lewis L. Chen, Chao Liu, Jingyi Wang, Yan PLoS One Research Article BACKGROUND: Susceptibility to and severity of ankylosing spondylitis (AS) are largely genetically determined. PPARGC1B, RUNX3 and TBKBP1 have recently been found to be associated with AS in patients of western European descent. Our purpose is to examine the influence of PPARGC1B, RUNX3 and TBKBP1 polymorphisms on the susceptibility to and the severity of ankylosing spondylitis in Chinese ethnic majority Han population. METHODS: Blood samples are drawn from 396 AS patients and 404 unrelated healthy controls. All the patients and the controls are Han Chinese and the patients are HLA-B27 positive. The AS patients are classified based on the severity of the disease. Twelve tag single nucleotide polymorphisms (tagSNPs) in PPARGC1B, RUNX3 and TBKBP1 are selected and genotyped. Frequencies of different genotypes and alleles are analyzed among the different severity AS patients and the controls. RESULTS: After Bonferroni correction, the rs7379457 SNP in PPARGC1B shows significant difference when comparing all AS patients to controls (p = 0.005). This SNP also shows significant difference when comparing normal AS patients to controls (p = 0.002). The rs1395621 SNP in RUNX3 shows significant difference when comparing severe AS patients to controls (p = 0.007). The rs9438876 SNP in RUNX3 shows significant difference when comparing normal AS patients to controls (p = 0.007). The rs8070463 SNP in TBKBP1 shows significant difference in genotype distribution when comparing severe AS patients to controls (p = 0.003). CONCLUSIONS: The rs7379457 SNP in PPARGC1B is related to susceptibility to AS in Chinese Han population. The rs7379457 SNP in PPARGC1B, the rs1395621 and rs9438876 SNPs in RUNX3, and the rs8070463 SNP in TBKBP1 are related to the severity of AS in Chinese Han population. Public Library of Science 2013-04-18 /pmc/articles/PMC3630117/ /pubmed/23637848 http://dx.doi.org/10.1371/journal.pone.0061527 Text en © 2013 Lian et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Lian, Zijian
Chai, Wei
Shi, Lewis L.
Chen, Chao
Liu, Jingyi
Wang, Yan
Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title_full Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title_fullStr Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title_full_unstemmed Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title_short Analysis of PPARGC1B, RUNX3 and TBKBP1 Polymorphisms in Chinese Han Patients with Ankylosing Spondylitis: A Case-Control Study
title_sort analysis of ppargc1b, runx3 and tbkbp1 polymorphisms in chinese han patients with ankylosing spondylitis: a case-control study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630117/
https://www.ncbi.nlm.nih.gov/pubmed/23637848
http://dx.doi.org/10.1371/journal.pone.0061527
work_keys_str_mv AT lianzijian analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy
AT chaiwei analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy
AT shilewisl analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy
AT chenchao analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy
AT liujingyi analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy
AT wangyan analysisofppargc1brunx3andtbkbp1polymorphismsinchinesehanpatientswithankylosingspondylitisacasecontrolstudy