Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family

Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genome...

Descripción completa

Detalles Bibliográficos
Autores principales: Cheong, Kyeongchae, Choi, Jaehyuk, Choi, Jaeyoung, Park, Jongsun, Jang, Suwang, Lee, Yong-Hwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2013
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630386/
https://www.ncbi.nlm.nih.gov/pubmed/23613683
http://dx.doi.org/10.5808/GI.2013.11.1.52
_version_ 1782266703343779840
author Cheong, Kyeongchae
Choi, Jaehyuk
Choi, Jaeyoung
Park, Jongsun
Jang, Suwang
Lee, Yong-Hwan
author_facet Cheong, Kyeongchae
Choi, Jaehyuk
Choi, Jaeyoung
Park, Jongsun
Jang, Suwang
Lee, Yong-Hwan
author_sort Cheong, Kyeongchae
collection PubMed
description Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families.
format Online
Article
Text
id pubmed-3630386
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Korea Genome Organization
record_format MEDLINE/PubMed
spelling pubmed-36303862013-04-23 Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family Cheong, Kyeongchae Choi, Jaehyuk Choi, Jaeyoung Park, Jongsun Jang, Suwang Lee, Yong-Hwan Genomics Inform Application Note Proteins in DNAJ/K families are ubiquitous, from prokaryotes to eukaryotes, and function as molecular chaperones. For systematic phylogenomics of the DNAJ/K families, we developed the Eukaryotic DNAJ/K Database (EDD). A total of 12,908 DNAJs and 4,886 DNAKs were identified from 339 eukaryotic genomes in the EDD. Kingdom-wide comparison of DNAJ/K families provides new insights on the evolutionary relationship within these families. Empowered by 'class', 'cluster', and 'taxonomy' browsers and the 'favorite' function, the EDD provides a versatile platform for comparative genomic analyses of DNAJ/K families. Korea Genome Organization 2013-03 2013-03-31 /pmc/articles/PMC3630386/ /pubmed/23613683 http://dx.doi.org/10.5808/GI.2013.11.1.52 Text en Copyright © 2013 by the Korea Genome Organization http://creativecommons.org/licenses/by-nc/3.0/ It is identical to the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/).
spellingShingle Application Note
Cheong, Kyeongchae
Choi, Jaehyuk
Choi, Jaeyoung
Park, Jongsun
Jang, Suwang
Lee, Yong-Hwan
Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_full Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_fullStr Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_full_unstemmed Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_short Eukaryotic DNAJ/K Database: A Comprehensive Phylogenomic Analysis Platform for the DNAJ/K Family
title_sort eukaryotic dnaj/k database: a comprehensive phylogenomic analysis platform for the dnaj/k family
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630386/
https://www.ncbi.nlm.nih.gov/pubmed/23613683
http://dx.doi.org/10.5808/GI.2013.11.1.52
work_keys_str_mv AT cheongkyeongchae eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily
AT choijaehyuk eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily
AT choijaeyoung eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily
AT parkjongsun eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily
AT jangsuwang eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily
AT leeyonghwan eukaryoticdnajkdatabaseacomprehensivephylogenomicanalysisplatformforthednajkfamily

Ejemplares similares