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D-peaks: A visual tool to display ChIP-seq peaks along the genome

ChIP-sequencing is a method of choice to localize the positions of protein binding sites on DNA on a whole genomic scale. The deciphering of the sequencing data produced by this novel technique is challenging and it is achieved by their rigorous interpretation using dedicated tools and adapted visua...

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Detalles Bibliográficos
Autores principales: Brohée, Sylvain, Bontempi, Gianluca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Landes Bioscience 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632623/
https://www.ncbi.nlm.nih.gov/pubmed/23132505
http://dx.doi.org/10.4161/trns.22457
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author Brohée, Sylvain
Bontempi, Gianluca
author_facet Brohée, Sylvain
Bontempi, Gianluca
author_sort Brohée, Sylvain
collection PubMed
description ChIP-sequencing is a method of choice to localize the positions of protein binding sites on DNA on a whole genomic scale. The deciphering of the sequencing data produced by this novel technique is challenging and it is achieved by their rigorous interpretation using dedicated tools and adapted visualization programs. Here, we present a bioinformatics tool (D-peaks) that adds several possibilities (including, user-friendliness, high-quality, relative position with respect to the genomic features) to the well-known visualization browsers or databases already existing. D-peaks is directly available through its web interface http://rsat.ulb.ac.be/dpeaks/ as well as a command line tool.
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spelling pubmed-36326232013-04-25 D-peaks: A visual tool to display ChIP-seq peaks along the genome Brohée, Sylvain Bontempi, Gianluca Transcription Short Article ChIP-sequencing is a method of choice to localize the positions of protein binding sites on DNA on a whole genomic scale. The deciphering of the sequencing data produced by this novel technique is challenging and it is achieved by their rigorous interpretation using dedicated tools and adapted visualization programs. Here, we present a bioinformatics tool (D-peaks) that adds several possibilities (including, user-friendliness, high-quality, relative position with respect to the genomic features) to the well-known visualization browsers or databases already existing. D-peaks is directly available through its web interface http://rsat.ulb.ac.be/dpeaks/ as well as a command line tool. Landes Bioscience 2012-09-01 2012-09-01 /pmc/articles/PMC3632623/ /pubmed/23132505 http://dx.doi.org/10.4161/trns.22457 Text en Copyright © 2012 Landes Bioscience http://creativecommons.org/licenses/by-nc/3.0/ This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.
spellingShingle Short Article
Brohée, Sylvain
Bontempi, Gianluca
D-peaks: A visual tool to display ChIP-seq peaks along the genome
title D-peaks: A visual tool to display ChIP-seq peaks along the genome
title_full D-peaks: A visual tool to display ChIP-seq peaks along the genome
title_fullStr D-peaks: A visual tool to display ChIP-seq peaks along the genome
title_full_unstemmed D-peaks: A visual tool to display ChIP-seq peaks along the genome
title_short D-peaks: A visual tool to display ChIP-seq peaks along the genome
title_sort d-peaks: a visual tool to display chip-seq peaks along the genome
topic Short Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632623/
https://www.ncbi.nlm.nih.gov/pubmed/23132505
http://dx.doi.org/10.4161/trns.22457
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