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Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean

Age estimates, typically determined by counting periodic growth increments in calcified structures of vertebrates, are the basis of population dynamics models used for managing exploited or threatened species. In fisheries research, the use of otolith growth rings as an indicator of fish age has inc...

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Autores principales: Dortel, Emmanuelle, Massiot-Granier, Félix, Rivot, Etienne, Million, Julien, Hallier, Jean-Pierre, Morize, Eric, Munaron, Jean-Marie, Bousquet, Nicolas, Chassot, Emmanuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634046/
https://www.ncbi.nlm.nih.gov/pubmed/23637773
http://dx.doi.org/10.1371/journal.pone.0060886
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author Dortel, Emmanuelle
Massiot-Granier, Félix
Rivot, Etienne
Million, Julien
Hallier, Jean-Pierre
Morize, Eric
Munaron, Jean-Marie
Bousquet, Nicolas
Chassot, Emmanuel
author_facet Dortel, Emmanuelle
Massiot-Granier, Félix
Rivot, Etienne
Million, Julien
Hallier, Jean-Pierre
Morize, Eric
Munaron, Jean-Marie
Bousquet, Nicolas
Chassot, Emmanuel
author_sort Dortel, Emmanuelle
collection PubMed
description Age estimates, typically determined by counting periodic growth increments in calcified structures of vertebrates, are the basis of population dynamics models used for managing exploited or threatened species. In fisheries research, the use of otolith growth rings as an indicator of fish age has increased considerably in recent decades. However, otolith readings include various sources of uncertainty. Current ageing methods, which converts an average count of rings into age, only provide periodic age estimates in which the range of uncertainty is fully ignored. In this study, we describe a hierarchical model for estimating individual ages from repeated otolith readings. The model was developed within a Bayesian framework to explicitly represent the sources of uncertainty associated with age estimation, to allow for individual variations and to include knowledge on parameters from expertise. The performance of the proposed model was examined through simulations, and then it was coupled to a two-stanza somatic growth model to evaluate the impact of the age estimation method on the age composition of commercial fisheries catches. We illustrate our approach using the saggital otoliths of yellowfin tuna of the Indian Ocean collected through large-scale mark-recapture experiments. The simulation performance suggested that the ageing error model was able to estimate the ageing biases and provide accurate age estimates, regardless of the age of the fish. Coupled with the growth model, this approach appeared suitable for modeling the growth of Indian Ocean yellowfin and is consistent with findings of previous studies. The simulations showed that the choice of the ageing method can strongly affect growth estimates with subsequent implications for age-structured data used as inputs for population models. Finally, our modeling approach revealed particularly useful to reflect uncertainty around age estimates into the process of growth estimation and it can be applied to any study relying on age estimation.
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spelling pubmed-36340462013-05-01 Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean Dortel, Emmanuelle Massiot-Granier, Félix Rivot, Etienne Million, Julien Hallier, Jean-Pierre Morize, Eric Munaron, Jean-Marie Bousquet, Nicolas Chassot, Emmanuel PLoS One Research Article Age estimates, typically determined by counting periodic growth increments in calcified structures of vertebrates, are the basis of population dynamics models used for managing exploited or threatened species. In fisheries research, the use of otolith growth rings as an indicator of fish age has increased considerably in recent decades. However, otolith readings include various sources of uncertainty. Current ageing methods, which converts an average count of rings into age, only provide periodic age estimates in which the range of uncertainty is fully ignored. In this study, we describe a hierarchical model for estimating individual ages from repeated otolith readings. The model was developed within a Bayesian framework to explicitly represent the sources of uncertainty associated with age estimation, to allow for individual variations and to include knowledge on parameters from expertise. The performance of the proposed model was examined through simulations, and then it was coupled to a two-stanza somatic growth model to evaluate the impact of the age estimation method on the age composition of commercial fisheries catches. We illustrate our approach using the saggital otoliths of yellowfin tuna of the Indian Ocean collected through large-scale mark-recapture experiments. The simulation performance suggested that the ageing error model was able to estimate the ageing biases and provide accurate age estimates, regardless of the age of the fish. Coupled with the growth model, this approach appeared suitable for modeling the growth of Indian Ocean yellowfin and is consistent with findings of previous studies. The simulations showed that the choice of the ageing method can strongly affect growth estimates with subsequent implications for age-structured data used as inputs for population models. Finally, our modeling approach revealed particularly useful to reflect uncertainty around age estimates into the process of growth estimation and it can be applied to any study relying on age estimation. Public Library of Science 2013-04-23 /pmc/articles/PMC3634046/ /pubmed/23637773 http://dx.doi.org/10.1371/journal.pone.0060886 Text en © 2013 Dortel et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Dortel, Emmanuelle
Massiot-Granier, Félix
Rivot, Etienne
Million, Julien
Hallier, Jean-Pierre
Morize, Eric
Munaron, Jean-Marie
Bousquet, Nicolas
Chassot, Emmanuel
Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title_full Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title_fullStr Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title_full_unstemmed Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title_short Accounting for Age Uncertainty in Growth Modeling, the Case Study of Yellowfin Tuna (Thunnus albacares) of the Indian Ocean
title_sort accounting for age uncertainty in growth modeling, the case study of yellowfin tuna (thunnus albacares) of the indian ocean
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634046/
https://www.ncbi.nlm.nih.gov/pubmed/23637773
http://dx.doi.org/10.1371/journal.pone.0060886
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