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Solving structure with sparse, randomly-oriented x-ray data

Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demo...

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Autores principales: Philipp, Hugh T., Ayyer, Kartik, Tate, Mark W., Elser, Veit, Gruner, Sol M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Optical Society of America 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635695/
https://www.ncbi.nlm.nih.gov/pubmed/22714341
http://dx.doi.org/10.1364/OE.20.013129
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author Philipp, Hugh T.
Ayyer, Kartik
Tate, Mark W.
Elser, Veit
Gruner, Sol M.
author_facet Philipp, Hugh T.
Ayyer, Kartik
Tate, Mark W.
Elser, Veit
Gruner, Sol M.
author_sort Philipp, Hugh T.
collection PubMed
description Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of recovering structural information at these extremes using low-fluence images of a randomly oriented 2D x-ray mask. Successful reconstruction is obtained with images averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-fluence data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal.
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spelling pubmed-36356952013-05-25 Solving structure with sparse, randomly-oriented x-ray data Philipp, Hugh T. Ayyer, Kartik Tate, Mark W. Elser, Veit Gruner, Sol M. Opt Express Research-Article Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of recovering structural information at these extremes using low-fluence images of a randomly oriented 2D x-ray mask. Successful reconstruction is obtained with images averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-fluence data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal. Optical Society of America 2012-05-25 /pmc/articles/PMC3635695/ /pubmed/22714341 http://dx.doi.org/10.1364/OE.20.013129 Text en © 2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially.
spellingShingle Research-Article
Philipp, Hugh T.
Ayyer, Kartik
Tate, Mark W.
Elser, Veit
Gruner, Sol M.
Solving structure with sparse, randomly-oriented x-ray data
title Solving structure with sparse, randomly-oriented x-ray data
title_full Solving structure with sparse, randomly-oriented x-ray data
title_fullStr Solving structure with sparse, randomly-oriented x-ray data
title_full_unstemmed Solving structure with sparse, randomly-oriented x-ray data
title_short Solving structure with sparse, randomly-oriented x-ray data
title_sort solving structure with sparse, randomly-oriented x-ray data
topic Research-Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635695/
https://www.ncbi.nlm.nih.gov/pubmed/22714341
http://dx.doi.org/10.1364/OE.20.013129
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