Cargando…
Solving structure with sparse, randomly-oriented x-ray data
Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demo...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Optical Society of America
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635695/ https://www.ncbi.nlm.nih.gov/pubmed/22714341 http://dx.doi.org/10.1364/OE.20.013129 |
_version_ | 1782267219740196864 |
---|---|
author | Philipp, Hugh T. Ayyer, Kartik Tate, Mark W. Elser, Veit Gruner, Sol M. |
author_facet | Philipp, Hugh T. Ayyer, Kartik Tate, Mark W. Elser, Veit Gruner, Sol M. |
author_sort | Philipp, Hugh T. |
collection | PubMed |
description | Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of recovering structural information at these extremes using low-fluence images of a randomly oriented 2D x-ray mask. Successful reconstruction is obtained with images averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-fluence data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal. |
format | Online Article Text |
id | pubmed-3635695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Optical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-36356952013-05-25 Solving structure with sparse, randomly-oriented x-ray data Philipp, Hugh T. Ayyer, Kartik Tate, Mark W. Elser, Veit Gruner, Sol M. Opt Express Research-Article Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing hundreds of thousands of images that contain very few x-rays. Each low-fluence image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of recovering structural information at these extremes using low-fluence images of a randomly oriented 2D x-ray mask. Successful reconstruction is obtained with images averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-fluence data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal. Optical Society of America 2012-05-25 /pmc/articles/PMC3635695/ /pubmed/22714341 http://dx.doi.org/10.1364/OE.20.013129 Text en © 2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially. |
spellingShingle | Research-Article Philipp, Hugh T. Ayyer, Kartik Tate, Mark W. Elser, Veit Gruner, Sol M. Solving structure with sparse, randomly-oriented x-ray data |
title | Solving structure with sparse, randomly-oriented x-ray data |
title_full | Solving structure with sparse, randomly-oriented x-ray data |
title_fullStr | Solving structure with sparse, randomly-oriented x-ray data |
title_full_unstemmed | Solving structure with sparse, randomly-oriented x-ray data |
title_short | Solving structure with sparse, randomly-oriented x-ray data |
title_sort | solving structure with sparse, randomly-oriented x-ray data |
topic | Research-Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635695/ https://www.ncbi.nlm.nih.gov/pubmed/22714341 http://dx.doi.org/10.1364/OE.20.013129 |
work_keys_str_mv | AT philipphught solvingstructurewithsparserandomlyorientedxraydata AT ayyerkartik solvingstructurewithsparserandomlyorientedxraydata AT tatemarkw solvingstructurewithsparserandomlyorientedxraydata AT elserveit solvingstructurewithsparserandomlyorientedxraydata AT grunersolm solvingstructurewithsparserandomlyorientedxraydata |