Cargando…

Sequence squeeze: an open contest for sequence compression

Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as...

Descripción completa

Detalles Bibliográficos
Autores principales: Holland, Richard CG, Lynch, Nick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637481/
https://www.ncbi.nlm.nih.gov/pubmed/23596984
http://dx.doi.org/10.1186/2047-217X-2-5
_version_ 1782267483190722560
author Holland, Richard CG
Lynch, Nick
author_facet Holland, Richard CG
Lynch, Nick
author_sort Holland, Richard CG
collection PubMed
description Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as might be expected. The need for a new compression technique was identified by the Pistoia Alliance who commissioned an open innovation contest to find one. The dynamic and interactive nature of the contest led to some novel algorithms and a high level of competition between participants.
format Online
Article
Text
id pubmed-3637481
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-36374812013-05-02 Sequence squeeze: an open contest for sequence compression Holland, Richard CG Lynch, Nick Gigascience Commentary Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as might be expected. The need for a new compression technique was identified by the Pistoia Alliance who commissioned an open innovation contest to find one. The dynamic and interactive nature of the contest led to some novel algorithms and a high level of competition between participants. BioMed Central 2013-04-18 /pmc/articles/PMC3637481/ /pubmed/23596984 http://dx.doi.org/10.1186/2047-217X-2-5 Text en Copyright © 2013 Holland and Lynch; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Holland, Richard CG
Lynch, Nick
Sequence squeeze: an open contest for sequence compression
title Sequence squeeze: an open contest for sequence compression
title_full Sequence squeeze: an open contest for sequence compression
title_fullStr Sequence squeeze: an open contest for sequence compression
title_full_unstemmed Sequence squeeze: an open contest for sequence compression
title_short Sequence squeeze: an open contest for sequence compression
title_sort sequence squeeze: an open contest for sequence compression
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637481/
https://www.ncbi.nlm.nih.gov/pubmed/23596984
http://dx.doi.org/10.1186/2047-217X-2-5
work_keys_str_mv AT hollandrichardcg sequencesqueezeanopencontestforsequencecompression
AT lynchnick sequencesqueezeanopencontestforsequencecompression