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Sequence squeeze: an open contest for sequence compression
Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637481/ https://www.ncbi.nlm.nih.gov/pubmed/23596984 http://dx.doi.org/10.1186/2047-217X-2-5 |
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author | Holland, Richard CG Lynch, Nick |
author_facet | Holland, Richard CG Lynch, Nick |
author_sort | Holland, Richard CG |
collection | PubMed |
description | Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as might be expected. The need for a new compression technique was identified by the Pistoia Alliance who commissioned an open innovation contest to find one. The dynamic and interactive nature of the contest led to some novel algorithms and a high level of competition between participants. |
format | Online Article Text |
id | pubmed-3637481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-36374812013-05-02 Sequence squeeze: an open contest for sequence compression Holland, Richard CG Lynch, Nick Gigascience Commentary Next-generation sequencing machines produce large quantities of data which are becoming increasingly difficult to move between collaborating organisations or even store within a single organisation. Compressing the data to assist with this is vital, but existing techniques do not perform as well as might be expected. The need for a new compression technique was identified by the Pistoia Alliance who commissioned an open innovation contest to find one. The dynamic and interactive nature of the contest led to some novel algorithms and a high level of competition between participants. BioMed Central 2013-04-18 /pmc/articles/PMC3637481/ /pubmed/23596984 http://dx.doi.org/10.1186/2047-217X-2-5 Text en Copyright © 2013 Holland and Lynch; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Commentary Holland, Richard CG Lynch, Nick Sequence squeeze: an open contest for sequence compression |
title | Sequence squeeze: an open contest for sequence compression |
title_full | Sequence squeeze: an open contest for sequence compression |
title_fullStr | Sequence squeeze: an open contest for sequence compression |
title_full_unstemmed | Sequence squeeze: an open contest for sequence compression |
title_short | Sequence squeeze: an open contest for sequence compression |
title_sort | sequence squeeze: an open contest for sequence compression |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637481/ https://www.ncbi.nlm.nih.gov/pubmed/23596984 http://dx.doi.org/10.1186/2047-217X-2-5 |
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