Cargando…

ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition

OBJECTIVE: The objective of this paper is to introduce a new language called ccML, designed to provide convenient pragmatic information to applications using the ISO/EN13606 reference model (RM), such as electronic health record (EHR) extracts editors. EHR extracts are presently built using the synt...

Descripción completa

Detalles Bibliográficos
Autores principales: Sánchez-de-Madariaga, Ricardo, Muñoz, Adolfo, Cáceres, Jesús, Somolinos, Roberto, Pascual, Mario, Martínez, Ignacio, Salvador, Carlos H, Monteagudo, José Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638171/
https://www.ncbi.nlm.nih.gov/pubmed/23019241
http://dx.doi.org/10.1136/amiajnl-2011-000722
_version_ 1782475805526327296
author Sánchez-de-Madariaga, Ricardo
Muñoz, Adolfo
Cáceres, Jesús
Somolinos, Roberto
Pascual, Mario
Martínez, Ignacio
Salvador, Carlos H
Monteagudo, José Luis
author_facet Sánchez-de-Madariaga, Ricardo
Muñoz, Adolfo
Cáceres, Jesús
Somolinos, Roberto
Pascual, Mario
Martínez, Ignacio
Salvador, Carlos H
Monteagudo, José Luis
author_sort Sánchez-de-Madariaga, Ricardo
collection PubMed
description OBJECTIVE: The objective of this paper is to introduce a new language called ccML, designed to provide convenient pragmatic information to applications using the ISO/EN13606 reference model (RM), such as electronic health record (EHR) extracts editors. EHR extracts are presently built using the syntactic and semantic information provided in the RM and constrained by archetypes. The ccML extra information enables the automation of the medico-legal context information edition, which is over 70% of the total in an extract, without modifying the RM information. MATERIALS AND METHODS: ccML is defined using a W3C XML schema file. Valid ccML files complement the RM with additional pragmatics information. The ccML language grammar is defined using formal language theory as a single-type tree grammar. The new language is tested using an EHR extracts editor application as proof-of-concept system. RESULTS: Seven ccML PVCodes (predefined value codes) are introduced in this grammar to cope with different realistic EHR edition situations. These seven PVCodes have different interpretation strategies, from direct look up in the ccML file itself, to more complex searches in archetypes or system precomputation. DISCUSSION: The possibility to declare generic types in ccML gives rise to ambiguity during interpretation. The criterion used to overcome ambiguity is that specificity should prevail over generality. The opposite would make the individual specific element declarations useless. CONCLUSION: A new mark-up language ccML is introduced that opens up the possibility of providing applications using the ISO/EN13606 RM with the necessary pragmatics information to be practical and realistic.
format Online
Article
Text
id pubmed-3638171
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher BMJ Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-36381712014-03-08 ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition Sánchez-de-Madariaga, Ricardo Muñoz, Adolfo Cáceres, Jesús Somolinos, Roberto Pascual, Mario Martínez, Ignacio Salvador, Carlos H Monteagudo, José Luis J Am Med Inform Assoc Research and Applications OBJECTIVE: The objective of this paper is to introduce a new language called ccML, designed to provide convenient pragmatic information to applications using the ISO/EN13606 reference model (RM), such as electronic health record (EHR) extracts editors. EHR extracts are presently built using the syntactic and semantic information provided in the RM and constrained by archetypes. The ccML extra information enables the automation of the medico-legal context information edition, which is over 70% of the total in an extract, without modifying the RM information. MATERIALS AND METHODS: ccML is defined using a W3C XML schema file. Valid ccML files complement the RM with additional pragmatics information. The ccML language grammar is defined using formal language theory as a single-type tree grammar. The new language is tested using an EHR extracts editor application as proof-of-concept system. RESULTS: Seven ccML PVCodes (predefined value codes) are introduced in this grammar to cope with different realistic EHR edition situations. These seven PVCodes have different interpretation strategies, from direct look up in the ccML file itself, to more complex searches in archetypes or system precomputation. DISCUSSION: The possibility to declare generic types in ccML gives rise to ambiguity during interpretation. The criterion used to overcome ambiguity is that specificity should prevail over generality. The opposite would make the individual specific element declarations useless. CONCLUSION: A new mark-up language ccML is introduced that opens up the possibility of providing applications using the ISO/EN13606 RM with the necessary pragmatics information to be practical and realistic. BMJ Publishing Group 2013 2012-09-27 /pmc/articles/PMC3638171/ /pubmed/23019241 http://dx.doi.org/10.1136/amiajnl-2011-000722 Text en Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions This is an open-access article distributed under the terms of the Creative Commons Attribution Non-commercial License, which permits use, distribution, and reproduction in any medium, provided the original work is properly cited, the use is non commercial and is otherwise in compliance with the license. See: http://creativecommons.org/licenses/by-nc/3.0/ and http://creativecommons.org/licenses/by-nc/3.0/legalcode
spellingShingle Research and Applications
Sánchez-de-Madariaga, Ricardo
Muñoz, Adolfo
Cáceres, Jesús
Somolinos, Roberto
Pascual, Mario
Martínez, Ignacio
Salvador, Carlos H
Monteagudo, José Luis
ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title_full ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title_fullStr ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title_full_unstemmed ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title_short ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition
title_sort ccml, a new mark-up language to improve iso/en 13606-based electronic health record extracts practical edition
topic Research and Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638171/
https://www.ncbi.nlm.nih.gov/pubmed/23019241
http://dx.doi.org/10.1136/amiajnl-2011-000722
work_keys_str_mv AT sanchezdemadariagaricardo ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT munozadolfo ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT caceresjesus ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT somolinosroberto ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT pascualmario ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT martinezignacio ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT salvadorcarlosh ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition
AT monteagudojoseluis ccmlanewmarkuplanguagetoimproveisoen13606basedelectronichealthrecordextractspracticaledition