Cargando…

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

BACKGROUND: Copy number variations (CNVs) are widespread in the human or animal genome and are a significant source of genetic variation, which has been demonstrated to play an important role in phenotypic diversity. Advances in technology have allowed for identification of a large number of CNVs in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jiang, Li, Jiang, Jicai, Yang, Jie, Liu, Xuan, Wang, Jiying, Wang, Haifei, Ding, Xiangdong, Liu, Jianfeng, Zhang, Qin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639935/ https://www.ncbi.nlm.nih.gov/pubmed/23442346 http://dx.doi.org/10.1186/1471-2164-14-131

Ejemplares similares

Genome-Wide Identification of Copy Number Variations in Chinese Holstein
por: Jiang, Li, et al.
Publicado: (2012)

A genome-wide detection of copy number variations using SNP genotyping arrays in swine
por: Wang, Jiying, et al.
Publicado: (2012)

Identification of Genome-Wide Copy Number Variations among Diverse Pig Breeds Using SNP Genotyping Arrays
por: Wang, Jiying, et al.
Publicado: (2013)

Enhancing Genome-Wide Copy Number Variation Identification by High Density Array CGH Using Diverse Resources of Pig Breeds
por: Wang, Jiying, et al.
Publicado: (2014)

Improved Detection and Characterization of Copy Number Variations Among Diverse Pig Breeds by Array CGH
por: Wang, Jiying, et al.
Publicado: (2015)

Genome-Wide Detection of Selective Signature in Chinese Holstein
por: Pan, Dunfei, et al.
Publicado: (2013)

Global copy number analyses by next generation sequencing provide insight into pig genome variation
por: Jiang, Jicai, et al.
Publicado: (2014)

A Multiple-SNP Approach for Genome-Wide Association Study of Milk Production Traits in Chinese Holstein Cattle
por: Fang, Ming, et al.
Publicado: (2014)

Integrated study of copy number states and genotype calls using high-density SNP arrays
por: Sun, Wei, et al.
Publicado: (2009)

Evaluation of copy number variation detection for a SNP array platform
por: Zhang, Xin, et al.
Publicado: (2014)

Analysis of Genome-Wide Copy Number Variations in Chinese Indigenous and Western Pig Breeds by 60 K SNP Genotyping Arrays
por: Wang, Yanan, et al.
Publicado: (2014)

Genome-Wide Copy Number Variations Using SNP Genotyping in a Mixed Breed Swine Population
por: Wiedmann, Ralph T., et al.
Publicado: (2015)

Genome-wide detection of copy number variation in Chinese indigenous sheep using an ovine high-density 600 K SNP array
por: Ma, Qing, et al.
Publicado: (2017)

Genome-Wide Copy Number Variations Inferred from SNP Genotyping Arrays Using a Large White and Minzhu Intercross Population
por: Wang, Ligang, et al.
Publicado: (2013)

Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population
por: Jiang, Li, et al.
Publicado: (2010)

Targeted resequencing of GWAS loci reveals novel genetic variants for milk production traits
por: Jiang, Li, et al.
Publicado: (2014)

Toward accurate high-throughput SNP genotyping in the presence of inherited copy number variation
por: MacConaill, Laura E, et al.
Publicado: (2007)

Identification of Copy Number Variations in Xiang and Kele Pigs
por: Xie, Jian, et al.
Publicado: (2016)

A Genome-Wide Detection of Copy Number Variations Using SNP Genotyping Arrays in Braque Français Type Pyrénées Dogs
por: Di Gerlando, Rosalia, et al.
Publicado: (2019)

Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle
por: Zhou, Yang, et al.
Publicado: (2018)

A Large-Scale Genome-Wide Association Study in U.S. Holstein Cattle
por: Jiang, Jicai, et al.
Publicado: (2019)

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
por: Eckel-Passow, Jeanette E, et al.
Publicado: (2011)

In silico genome-wide miRNA-QTL-SNPs analyses identify a functional SNP associated with mastitis in Holsteins
por: Jiang, Qiang, et al.
Publicado: (2019)

Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array
por: Salomon-Torres, Ricardo, et al.
Publicado: (2015)

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data
por: Colella, Stefano, et al.
Publicado: (2007)

Genome-wide association analysis of heifer livability and early first calving in Holstein cattle
por: Gao, Yahui, et al.
Publicado: (2023)

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
por: Hou, Yali, et al.
Publicado: (2012)

CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data
por: Cao, Qingyi, et al.
Publicado: (2011)

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel
por: Khatkar, Mehar S, et al.
Publicado: (2008)

Genome-Wide Detection and Analysis of Copy Number Variation in Anhui Indigenous and Western Commercial Pig Breeds Using Porcine 80K SNP BeadChip
por: Xu, Chengliang, et al.
Publicado: (2023)

EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data
por: Zhang, Zhongyang, et al.
Publicado: (2019)

Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort
por: Valsesia, Armand, et al.
Publicado: (2012)

High confidence copy number variants identified in Holstein dairy cattle from whole genome sequence and genotype array data
por: Butty, Adrien M., et al.
Publicado: (2020)

A Million-Cow Genome-Wide Association Study of Three Fertility Traits in U.S. Holstein Cows
por: Liang, Zuoxiang, et al.
Publicado: (2023)

Partitioning of copy-number genotypes in pedigrees
por: Perreault, Louis-Philippe Lemieux, et al.
Publicado: (2010)

Genome Wide Sampling Sequencing for SNP Genotyping: Methods, Challenges and Future Development
por: Jiang, Zhihua, et al.
Publicado: (2016)

A Large-Scale Genome-Wide Association Study of Epistasis Effects of Production Traits and Daughter Pregnancy Rate in U.S. Holstein Cattle
por: Prakapenka, Dzianis, et al.
Publicado: (2021)

Single-cell whole-genome amplification technique impacts the accuracy of SNP microarray-based genotyping and copy number analyses
por: Treff, Nathan R., et al.
Publicado: (2011)

Genomic predictions combining SNP markers and copy number variations in Nellore cattle
por: Hay, El Hamidi A., et al.
Publicado: (2018)

SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
por: Sanders, Mathijs A, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_vfe8417j1gcdmqqr2shusm3qp5