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Electronic Implementation of a Repressilator with Quorum Sensing Feedback
We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing co...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642084/ https://www.ncbi.nlm.nih.gov/pubmed/23658793 http://dx.doi.org/10.1371/journal.pone.0062997 |
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author | Hellen, Edward H. Dana, Syamal K. Zhurov, Boris Volkov, Evgeny |
author_facet | Hellen, Edward H. Dana, Syamal K. Zhurov, Boris Volkov, Evgeny |
author_sort | Hellen, Edward H. |
collection | PubMed |
description | We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing competition between inhibitory and stimulatory activities localized in that gene. Numerical simulations show several interesting dynamics, multi-stability of limit cycle with stable steady-state, multi-stability of different stable steady-states, limit cycle with period-doubling and reverse period-doubling, and infinite period bifurcation transitions for both increasing and decreasing strength of quorum sensing feedback. We design an electronic analog of the repressilator with quorum sensing feedback and reproduce, in experiment, the numerically predicted dynamical features of the system. Noise amplification near infinite period bifurcation is also observed. An important feature of the electronic design is the accessibility and control of the important system parameters. |
format | Online Article Text |
id | pubmed-3642084 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-36420842013-05-08 Electronic Implementation of a Repressilator with Quorum Sensing Feedback Hellen, Edward H. Dana, Syamal K. Zhurov, Boris Volkov, Evgeny PLoS One Research Article We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing competition between inhibitory and stimulatory activities localized in that gene. Numerical simulations show several interesting dynamics, multi-stability of limit cycle with stable steady-state, multi-stability of different stable steady-states, limit cycle with period-doubling and reverse period-doubling, and infinite period bifurcation transitions for both increasing and decreasing strength of quorum sensing feedback. We design an electronic analog of the repressilator with quorum sensing feedback and reproduce, in experiment, the numerically predicted dynamical features of the system. Noise amplification near infinite period bifurcation is also observed. An important feature of the electronic design is the accessibility and control of the important system parameters. Public Library of Science 2013-05-02 /pmc/articles/PMC3642084/ /pubmed/23658793 http://dx.doi.org/10.1371/journal.pone.0062997 Text en © 2013 Hellen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Hellen, Edward H. Dana, Syamal K. Zhurov, Boris Volkov, Evgeny Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title | Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title_full | Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title_fullStr | Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title_full_unstemmed | Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title_short | Electronic Implementation of a Repressilator with Quorum Sensing Feedback |
title_sort | electronic implementation of a repressilator with quorum sensing feedback |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642084/ https://www.ncbi.nlm.nih.gov/pubmed/23658793 http://dx.doi.org/10.1371/journal.pone.0062997 |
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