Cargando…

Electronic Implementation of a Repressilator with Quorum Sensing Feedback

We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing co...

Descripción completa

Detalles Bibliográficos
Autores principales: Hellen, Edward H., Dana, Syamal K., Zhurov, Boris, Volkov, Evgeny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642084/
https://www.ncbi.nlm.nih.gov/pubmed/23658793
http://dx.doi.org/10.1371/journal.pone.0062997
_version_ 1782268097247313920
author Hellen, Edward H.
Dana, Syamal K.
Zhurov, Boris
Volkov, Evgeny
author_facet Hellen, Edward H.
Dana, Syamal K.
Zhurov, Boris
Volkov, Evgeny
author_sort Hellen, Edward H.
collection PubMed
description We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing competition between inhibitory and stimulatory activities localized in that gene. Numerical simulations show several interesting dynamics, multi-stability of limit cycle with stable steady-state, multi-stability of different stable steady-states, limit cycle with period-doubling and reverse period-doubling, and infinite period bifurcation transitions for both increasing and decreasing strength of quorum sensing feedback. We design an electronic analog of the repressilator with quorum sensing feedback and reproduce, in experiment, the numerically predicted dynamical features of the system. Noise amplification near infinite period bifurcation is also observed. An important feature of the electronic design is the accessibility and control of the important system parameters.
format Online
Article
Text
id pubmed-3642084
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-36420842013-05-08 Electronic Implementation of a Repressilator with Quorum Sensing Feedback Hellen, Edward H. Dana, Syamal K. Zhurov, Boris Volkov, Evgeny PLoS One Research Article We investigate the dynamics of a synthetic genetic repressilator with quorum sensing feedback. In a basic genetic ring oscillator network in which three genes inhibit each other in unidirectional manner, an additional quorum sensing feedback loop stimulates the activity of a chosen gene providing competition between inhibitory and stimulatory activities localized in that gene. Numerical simulations show several interesting dynamics, multi-stability of limit cycle with stable steady-state, multi-stability of different stable steady-states, limit cycle with period-doubling and reverse period-doubling, and infinite period bifurcation transitions for both increasing and decreasing strength of quorum sensing feedback. We design an electronic analog of the repressilator with quorum sensing feedback and reproduce, in experiment, the numerically predicted dynamical features of the system. Noise amplification near infinite period bifurcation is also observed. An important feature of the electronic design is the accessibility and control of the important system parameters. Public Library of Science 2013-05-02 /pmc/articles/PMC3642084/ /pubmed/23658793 http://dx.doi.org/10.1371/journal.pone.0062997 Text en © 2013 Hellen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Hellen, Edward H.
Dana, Syamal K.
Zhurov, Boris
Volkov, Evgeny
Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title_full Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title_fullStr Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title_full_unstemmed Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title_short Electronic Implementation of a Repressilator with Quorum Sensing Feedback
title_sort electronic implementation of a repressilator with quorum sensing feedback
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642084/
https://www.ncbi.nlm.nih.gov/pubmed/23658793
http://dx.doi.org/10.1371/journal.pone.0062997
work_keys_str_mv AT hellenedwardh electronicimplementationofarepressilatorwithquorumsensingfeedback
AT danasyamalk electronicimplementationofarepressilatorwithquorumsensingfeedback
AT zhurovboris electronicimplementationofarepressilatorwithquorumsensingfeedback
AT volkovevgeny electronicimplementationofarepressilatorwithquorumsensingfeedback