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Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes

The olfactory system integrates signals from receptors expressed in olfactory sensory neurons. Each sensory neuron expresses only one of many similar olfactory receptors (ORs). The choice of receptor is made stochastically early in the differentiation process and is maintained throughout the life of...

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Detalles Bibliográficos
Autores principales: Alsing, Anne Katrine, Sneppen, Kim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3643594/
https://www.ncbi.nlm.nih.gov/pubmed/23519617
http://dx.doi.org/10.1093/nar/gkt181
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author Alsing, Anne Katrine
Sneppen, Kim
author_facet Alsing, Anne Katrine
Sneppen, Kim
author_sort Alsing, Anne Katrine
collection PubMed
description The olfactory system integrates signals from receptors expressed in olfactory sensory neurons. Each sensory neuron expresses only one of many similar olfactory receptors (ORs). The choice of receptor is made stochastically early in the differentiation process and is maintained throughout the life of the neuron. The underlying mechanism of this stochastic commitment to one of multiple similar OR genes remains elusive. We present a theoretical analysis of a mechanism that invokes important epigenetic properties of the system. The proposed model combines nucleosomes and associated read–write enzymes as mediators of a cis-acting positive feedback with a trans-acting negative feedback, thereby coupling the local epigenetic landscape of the individual OR genes in a way that allow one and only one gene to be active at any time. The model pinpoint that singular gene selection does not require transient mechanisms, enhancer elements or transcription factors to separate choice from maintenance. In addition, our hypothesis allow us to combine all reported characteristics of singular OR gene selection, in particular that OR genes are silenced from OR transgenes. Intriguingly, it predicts that OR transgenes placed in close proximity should always be expressed simultaneously, though rarely.
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spelling pubmed-36435942013-05-03 Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes Alsing, Anne Katrine Sneppen, Kim Nucleic Acids Res Computational Biology The olfactory system integrates signals from receptors expressed in olfactory sensory neurons. Each sensory neuron expresses only one of many similar olfactory receptors (ORs). The choice of receptor is made stochastically early in the differentiation process and is maintained throughout the life of the neuron. The underlying mechanism of this stochastic commitment to one of multiple similar OR genes remains elusive. We present a theoretical analysis of a mechanism that invokes important epigenetic properties of the system. The proposed model combines nucleosomes and associated read–write enzymes as mediators of a cis-acting positive feedback with a trans-acting negative feedback, thereby coupling the local epigenetic landscape of the individual OR genes in a way that allow one and only one gene to be active at any time. The model pinpoint that singular gene selection does not require transient mechanisms, enhancer elements or transcription factors to separate choice from maintenance. In addition, our hypothesis allow us to combine all reported characteristics of singular OR gene selection, in particular that OR genes are silenced from OR transgenes. Intriguingly, it predicts that OR transgenes placed in close proximity should always be expressed simultaneously, though rarely. Oxford University Press 2013-05 2013-03-20 /pmc/articles/PMC3643594/ /pubmed/23519617 http://dx.doi.org/10.1093/nar/gkt181 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Computational Biology
Alsing, Anne Katrine
Sneppen, Kim
Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title_full Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title_fullStr Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title_full_unstemmed Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title_short Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
title_sort differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3643594/
https://www.ncbi.nlm.nih.gov/pubmed/23519617
http://dx.doi.org/10.1093/nar/gkt181
work_keys_str_mv AT alsingannekatrine differentiationofdevelopingolfactoryneuronsanalysedintermsofcoupledepigeneticlandscapes
AT sneppenkim differentiationofdevelopingolfactoryneuronsanalysedintermsofcoupledepigeneticlandscapes