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MANTA—an open-source, high density electrophysiology recording suite for MATLAB

The distributed nature of nervous systems makes it necessary to record from a large number of sites in order to decipher the neural code, whether single cell, local field potential (LFP), micro-electrocorticograms (μECoG), electroencephalographic (EEG), magnetoencephalographic (MEG) or in vitro micr...

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Autores principales: Englitz, B., David, S. V., Sorenson, M. D., Shamma, S. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644699/
https://www.ncbi.nlm.nih.gov/pubmed/23653593
http://dx.doi.org/10.3389/fncir.2013.00069
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author Englitz, B.
David, S. V.
Sorenson, M. D.
Shamma, S. A.
author_facet Englitz, B.
David, S. V.
Sorenson, M. D.
Shamma, S. A.
author_sort Englitz, B.
collection PubMed
description The distributed nature of nervous systems makes it necessary to record from a large number of sites in order to decipher the neural code, whether single cell, local field potential (LFP), micro-electrocorticograms (μECoG), electroencephalographic (EEG), magnetoencephalographic (MEG) or in vitro micro-electrode array (MEA) data are considered. High channel-count recordings also optimize the yield of a preparation and the efficiency of time invested by the researcher. Currently, data acquisition (DAQ) systems with high channel counts (>100) can be purchased from a limited number of companies at considerable prices. These systems are typically closed-source and thus prohibit custom extensions or improvements by end users. We have developed MANTA, an open-source MATLAB-based DAQ system, as an alternative to existing options. MANTA combines high channel counts (up to 1440 channels/PC), usage of analog or digital headstages, low per channel cost (<$90/channel), feature-rich display and filtering, a user-friendly interface, and a modular design permitting easy addition of new features. MANTA is licensed under the GPL and free of charge. The system has been tested by daily use in multiple setups for >1 year, recording reliably from 128 channels. It offers a growing list of features, including integrated spike sorting, PSTH and CSD display and fully customizable electrode array geometry (including 3D arrays), some of which are not available in commercial systems. MANTA runs on a typical PC and communicates via TCP/IP and can thus be easily integrated with existing stimulus generation/control systems in a lab at a fraction of the cost of commercial systems. With modern neuroscience developing rapidly, MANTA provides a flexible platform that can be rapidly adapted to the needs of new analyses and questions. Being open-source, the development of MANTA can outpace commercial solutions in functionality, while maintaining a low price-point.
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spelling pubmed-36446992013-05-07 MANTA—an open-source, high density electrophysiology recording suite for MATLAB Englitz, B. David, S. V. Sorenson, M. D. Shamma, S. A. Front Neural Circuits Neuroscience The distributed nature of nervous systems makes it necessary to record from a large number of sites in order to decipher the neural code, whether single cell, local field potential (LFP), micro-electrocorticograms (μECoG), electroencephalographic (EEG), magnetoencephalographic (MEG) or in vitro micro-electrode array (MEA) data are considered. High channel-count recordings also optimize the yield of a preparation and the efficiency of time invested by the researcher. Currently, data acquisition (DAQ) systems with high channel counts (>100) can be purchased from a limited number of companies at considerable prices. These systems are typically closed-source and thus prohibit custom extensions or improvements by end users. We have developed MANTA, an open-source MATLAB-based DAQ system, as an alternative to existing options. MANTA combines high channel counts (up to 1440 channels/PC), usage of analog or digital headstages, low per channel cost (<$90/channel), feature-rich display and filtering, a user-friendly interface, and a modular design permitting easy addition of new features. MANTA is licensed under the GPL and free of charge. The system has been tested by daily use in multiple setups for >1 year, recording reliably from 128 channels. It offers a growing list of features, including integrated spike sorting, PSTH and CSD display and fully customizable electrode array geometry (including 3D arrays), some of which are not available in commercial systems. MANTA runs on a typical PC and communicates via TCP/IP and can thus be easily integrated with existing stimulus generation/control systems in a lab at a fraction of the cost of commercial systems. With modern neuroscience developing rapidly, MANTA provides a flexible platform that can be rapidly adapted to the needs of new analyses and questions. Being open-source, the development of MANTA can outpace commercial solutions in functionality, while maintaining a low price-point. Frontiers Media S.A. 2013-05-06 /pmc/articles/PMC3644699/ /pubmed/23653593 http://dx.doi.org/10.3389/fncir.2013.00069 Text en Copyright © 2013 Englitz, David, Sorenson and Shamma. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.
spellingShingle Neuroscience
Englitz, B.
David, S. V.
Sorenson, M. D.
Shamma, S. A.
MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title_full MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title_fullStr MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title_full_unstemmed MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title_short MANTA—an open-source, high density electrophysiology recording suite for MATLAB
title_sort manta—an open-source, high density electrophysiology recording suite for matlab
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644699/
https://www.ncbi.nlm.nih.gov/pubmed/23653593
http://dx.doi.org/10.3389/fncir.2013.00069
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