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A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding

BACKGROUND: A tandem technique of hard equipment is often used for the chemical analysis of a single cell to first isolate and then detect the wanted identities. The first part is the separation of wanted chemicals from the bulk of a cell; the second part is the actual detection of the important ide...

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Autor principal: Lin, Ying-Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648400/
https://www.ncbi.nlm.nih.gov/pubmed/23627990
http://dx.doi.org/10.1186/1758-2946-5-21
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author Lin, Ying-Ting
author_facet Lin, Ying-Ting
author_sort Lin, Ying-Ting
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description BACKGROUND: A tandem technique of hard equipment is often used for the chemical analysis of a single cell to first isolate and then detect the wanted identities. The first part is the separation of wanted chemicals from the bulk of a cell; the second part is the actual detection of the important identities. To identify the key structural modifications around ligand binding, the present study aims to develop a counterpart of tandem technique for cheminformatics. A statistical regression and its outliers act as a computational technique for separation. RESULTS: A PPARγ (peroxisome proliferator-activated receptor gamma) agonist cellular system was subjected to such an investigation. Results show that this tandem regression-outlier analysis, or the prioritization of the context equations tagged with features of the outliers, is an effective regression technique of cheminformatics to detect key structural modifications, as well as their tendency of impact to ligand binding. CONCLUSIONS: The key structural modifications around ligand binding are effectively extracted or characterized out of cellular reactions. This is because molecular binding is the paramount factor in such ligand cellular system and key structural modifications around ligand binding are expected to create outliers. Therefore, such outliers can be captured by this tandem regression-outlier analysis.
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spelling pubmed-36484002013-05-10 A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding Lin, Ying-Ting J Cheminform Research Article BACKGROUND: A tandem technique of hard equipment is often used for the chemical analysis of a single cell to first isolate and then detect the wanted identities. The first part is the separation of wanted chemicals from the bulk of a cell; the second part is the actual detection of the important identities. To identify the key structural modifications around ligand binding, the present study aims to develop a counterpart of tandem technique for cheminformatics. A statistical regression and its outliers act as a computational technique for separation. RESULTS: A PPARγ (peroxisome proliferator-activated receptor gamma) agonist cellular system was subjected to such an investigation. Results show that this tandem regression-outlier analysis, or the prioritization of the context equations tagged with features of the outliers, is an effective regression technique of cheminformatics to detect key structural modifications, as well as their tendency of impact to ligand binding. CONCLUSIONS: The key structural modifications around ligand binding are effectively extracted or characterized out of cellular reactions. This is because molecular binding is the paramount factor in such ligand cellular system and key structural modifications around ligand binding are expected to create outliers. Therefore, such outliers can be captured by this tandem regression-outlier analysis. BioMed Central 2013-04-30 /pmc/articles/PMC3648400/ /pubmed/23627990 http://dx.doi.org/10.1186/1758-2946-5-21 Text en Copyright © 2013 Lin; licensee Chemistry Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Lin, Ying-Ting
A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title_full A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title_fullStr A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title_full_unstemmed A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title_short A tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
title_sort tandem regression-outlier analysis of a ligand cellular system for key structural modifications around ligand binding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648400/
https://www.ncbi.nlm.nih.gov/pubmed/23627990
http://dx.doi.org/10.1186/1758-2946-5-21
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