Cargando…

The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources

Efficient methods to explore plant agro-biodiversity for climate change adaptive traits are urgently required. The focused identification of germplasm strategy (FIGS) is one such approach. FIGS works on the premise that germplasm is likely to reflect the selection pressures of the environment in whi...

Descripción completa

Detalles Bibliográficos
Autores principales: Khazaei, Hamid, Street, Kenneth, Bari, Abdallah, Mackay, Michael, Stoddard, Frederick L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648475/
https://www.ncbi.nlm.nih.gov/pubmed/23667581
http://dx.doi.org/10.1371/journal.pone.0063107
_version_ 1782268851222740992
author Khazaei, Hamid
Street, Kenneth
Bari, Abdallah
Mackay, Michael
Stoddard, Frederick L.
author_facet Khazaei, Hamid
Street, Kenneth
Bari, Abdallah
Mackay, Michael
Stoddard, Frederick L.
author_sort Khazaei, Hamid
collection PubMed
description Efficient methods to explore plant agro-biodiversity for climate change adaptive traits are urgently required. The focused identification of germplasm strategy (FIGS) is one such approach. FIGS works on the premise that germplasm is likely to reflect the selection pressures of the environment in which it developed. Environmental parameters describing plant germplasm collection sites are used as selection criteria to improve the probability of uncovering useful variation. This study was designed to test the effectiveness of FIGS to search a large faba bean (Vicia faba L.) collection for traits related to drought adaptation. Two sets of faba bean accessions were created, one from moisture-limited environments, and the other from wetter sites. The two sets were grown under well watered conditions and leaf morpho-physiological traits related to plant water use were measured. Machine-learning algorithms split the accessions into two groups based on the evaluation data and the groups created by this process were compared to the original climate-based FIGS sets. The sets defined by trait data were in almost perfect agreement to the FIGS sets, demonstrating that ecotypic differentiation driven by moisture availability has occurred within the faba bean genepool. Leaflet and canopy temperature as well as relative water content contributed more than other traits to the discrimination between sets, indicating that their utility as drought-tolerance selection criteria for faba bean germplasm. This study supports the assertion that FIGS could be an effective tool to enhance the discovery of new genes for abiotic stress adaptation.
format Online
Article
Text
id pubmed-3648475
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-36484752013-05-10 The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources Khazaei, Hamid Street, Kenneth Bari, Abdallah Mackay, Michael Stoddard, Frederick L. PLoS One Research Article Efficient methods to explore plant agro-biodiversity for climate change adaptive traits are urgently required. The focused identification of germplasm strategy (FIGS) is one such approach. FIGS works on the premise that germplasm is likely to reflect the selection pressures of the environment in which it developed. Environmental parameters describing plant germplasm collection sites are used as selection criteria to improve the probability of uncovering useful variation. This study was designed to test the effectiveness of FIGS to search a large faba bean (Vicia faba L.) collection for traits related to drought adaptation. Two sets of faba bean accessions were created, one from moisture-limited environments, and the other from wetter sites. The two sets were grown under well watered conditions and leaf morpho-physiological traits related to plant water use were measured. Machine-learning algorithms split the accessions into two groups based on the evaluation data and the groups created by this process were compared to the original climate-based FIGS sets. The sets defined by trait data were in almost perfect agreement to the FIGS sets, demonstrating that ecotypic differentiation driven by moisture availability has occurred within the faba bean genepool. Leaflet and canopy temperature as well as relative water content contributed more than other traits to the discrimination between sets, indicating that their utility as drought-tolerance selection criteria for faba bean germplasm. This study supports the assertion that FIGS could be an effective tool to enhance the discovery of new genes for abiotic stress adaptation. Public Library of Science 2013-05-08 /pmc/articles/PMC3648475/ /pubmed/23667581 http://dx.doi.org/10.1371/journal.pone.0063107 Text en © 2013 Khazaei et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Khazaei, Hamid
Street, Kenneth
Bari, Abdallah
Mackay, Michael
Stoddard, Frederick L.
The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title_full The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title_fullStr The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title_full_unstemmed The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title_short The FIGS (Focused Identification of Germplasm Strategy) Approach Identifies Traits Related to Drought Adaptation in Vicia faba Genetic Resources
title_sort figs (focused identification of germplasm strategy) approach identifies traits related to drought adaptation in vicia faba genetic resources
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648475/
https://www.ncbi.nlm.nih.gov/pubmed/23667581
http://dx.doi.org/10.1371/journal.pone.0063107
work_keys_str_mv AT khazaeihamid thefigsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT streetkenneth thefigsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT bariabdallah thefigsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT mackaymichael thefigsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT stoddardfrederickl thefigsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT khazaeihamid figsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT streetkenneth figsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT bariabdallah figsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT mackaymichael figsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources
AT stoddardfrederickl figsfocusedidentificationofgermplasmstrategyapproachidentifiestraitsrelatedtodroughtadaptationinviciafabageneticresources