Cargando…

Mathematical Characterization of Protein Transmembrane Regions

Graphical bioinformatics has paved a unique way of mathematical characterization of proteins and proteomic maps. The graphics representations and the corresponding mathematical descriptors have proved to be useful and have provided unique solutions to problems related to identification, comparisons,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Roy Choudhury, Amrita, Zhukov, Nikolay, Novič, Marjana
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3649804/ https://www.ncbi.nlm.nih.gov/pubmed/23690747 http://dx.doi.org/10.1155/2013/607830

Ejemplares similares

PredβTM: A Novel β-Transmembrane Region Prediction Algorithm
por: Roy Choudhury, Amrita, et al.
Publicado: (2015)

Structural Analysis of a Peptide Fragment of Transmembrane Transporter Protein Bilitranslocase
por: Perdih, Andrej, et al.
Publicado: (2012)

Structural Analysis and Dynamic Processes of the Transmembrane Segment Inside Different Micellar Environments—Implications for the TM4 Fragment of the Bilitranslocase Protein
por: Szutkowski, Kosma, et al.
Publicado: (2019)

Structural Model of the Bilitranslocase Transmembrane Domain Supported by NMR and FRET Data
por: Choudhury, Amrita Roy, et al.
Publicado: (2015)

Prediction of Transmembrane Regions, Cholesterol, and Ganglioside Binding Sites in Amyloid-Forming Proteins Indicate Potential for Amyloid Pore Formation
por: Venko, Katja, et al.
Publicado: (2021)

Computational Approaches for Revealing the Structure of Membrane Transporters: Case Study on Bilitranslocase
por: Venko, Katja, et al.
Publicado: (2017)

Integration of QSAR and SAR methods for the mechanistic interpretation of predictive models for carcinogenicity
por: Fjodorova, Natalja, et al.
Publicado: (2012)

An In Silico Approach for Assessment of the Membrane Transporter Activities of Phenols: A Case Study Based on Computational Models of Transport Activity for the Transporter Bilitranslocase
por: Venko, Katja, et al.
Publicado: (2019)

QSAR Models for Reproductive Toxicity and Endocrine Disruption Activity
por: Novič, Marjana, et al.
Publicado: (2010)

Recent Advances on P-Glycoprotein (ABCB1) Transporter Modelling with In Silico Methods
por: Mora Lagares, Liadys, et al.
Publicado: (2022)

Multiclass Classifier for P-Glycoprotein Substrates, Inhibitors, and Non-Active Compounds
por: Mora Lagares, Liadys, et al.
Publicado: (2019)

A Comprehensive Cheminformatics Analysis of Structural Features Affecting the Binding Activity of Fullerene Derivatives
por: Fjodorova, Natalja, et al.
Publicado: (2020)

Quantitative structure-activation barrier relationship modeling for Diels-Alder ligations utilizing quantum chemical structural descriptors
por: Nandi, Sisir, et al.
Publicado: (2013)

Characterization and phylogenetic analysis of multiple C2 domain and transmembrane region proteins in maize
por: Zhao, Yujun, et al.
Publicado: (2022)

Structure–Function Relationships in the Human P-Glycoprotein (ABCB1): Insights from Molecular Dynamics Simulations
por: Mora Lagares, Liadys, et al.
Publicado: (2021)

In Silico Discovery of Novel Potent Antioxidants on the Basis of Pulvinic Acid and Coumarine Derivatives and Their Experimental Evaluation
por: Martinčič, Rok, et al.
Publicado: (2015)

Detecting pore-lining regions in transmembrane protein sequences
por: Nugent, Timothy, et al.
Publicado: (2012)

New public QSAR model for carcinogenicity
por: Fjodorova, Natalja, et al.
Publicado: (2010)

Flexibility of a biotinylated ligand in artificial metalloenzymes based on streptavidin—an insight from molecular dynamics simulations with classical and ab initio force fields
por: Panek, Jarosław J., et al.
Publicado: (2010)

CPANNatNIC software for counter-propagation neural network to assist in read-across
por: Drgan, Viktor, et al.
Publicado: (2017)

Characterization of Disease-Associated Mutations in Human Transmembrane Proteins
por: Molnár, János, et al.
Publicado: (2016)

Genome-wide identification and characterization of multiple C2 domains and transmembrane region proteins in Gossypium hirsutum
por: Hao, Pengbo, et al.
Publicado: (2020)

MemDis: Predicting Disordered Regions in Transmembrane Proteins
por: Dobson, Laszlo, et al.
Publicado: (2021)

Adaptive Threonine Increase in Transmembrane Regions of Mitochondrial Proteins in Higher Primates
por: Kitazoe, Yasuhiro, et al.
Publicado: (2008)

The Transmembrane Region Is Responsible for Targeting of Adaptor Protein LAX into “Heavy Rafts”
por: Hrdinka, Matous, et al.
Publicado: (2012)

Characterizing interaction between the juxtamembrane region of the single transmembrane protein and membrane using chemically synthesized peptides
por: Sato, Takeshi, et al.
Publicado: (2023)

A Mathematical Model of T Lymphocyte Calcium Dynamics Derived from Single Transmembrane Protein Properties
por: Schmeitz, Christine, et al.
Publicado: (2013)

Structural characterizations of phosphorylatable residues in transmembrane proteins from Arabidopsis thaliana
por: Xue, Bin, et al.
Publicado: (2013)

Alignment of transmembrane regions in the cystic fibrosis transmembrane conductance regulator chloride channel pore
por: Wang, Wuyang, et al.
Publicado: (2011)

Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureus
por: Borišek, Jure, et al.
Publicado: (2018)

Biomimetic Membranes with Transmembrane Proteins: State-of-the-Art in Transmembrane Protein Applications
por: Ryu, Hyunil, et al.
Publicado: (2019)

Biochemical characterization of transmembrane proteins (TMEMs) in the ciliary transition zone
por: Shoaib, E, et al.
Publicado: (2015)

Mathematical Characterization of Protein Sequences Using Patterns as Chemical Group Combinations of Amino Acids
por: Das, Jayanta Kumar, et al.
Publicado: (2016)

Cholesterol twists the transmembrane Di-Gly region of amyloid-precursor protein
por: Wang, David Tzu-Wei, et al.
Publicado: (2023)

Prediction of disease-associated mutations in the transmembrane regions of proteins with known 3D structure
por: Popov, Petr, et al.
Publicado: (2019)

Purification and characterization of the Lassa virus transmembrane domain
por: Keating, Patrick M., et al.
Publicado: (2022)

An analysis of oligomerization interfaces in transmembrane proteins
por: Duarte, Jose M, et al.
Publicado: (2013)

Specificity of Transmembrane Protein Palmitoylation in Yeast
por: González Montoro, Ayelén, et al.
Publicado: (2011)

Identification and Characterization of Two Transmembrane Proteins Required for Virulence of Ustilago maydis
por: Weiland, Paul, et al.
Publicado: (2021)

Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata
por: Brault, Marie L, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_mcfvpghc2ipuo79sagj0e3u4ng