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NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers

To facilitate the high-throughput acquisition of nuclear magnetic resonance (NMR) experimental data on large sets of samples, we have developed a simple and straightforward automated methodology that capitalizes on recent advances in Bruker BioSpin NMR spectrometer hardware and software. Given the d...

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Detalles Bibliográficos
Autores principales: Clos, Lawrence J., Jofre, M. Fransisca, Ellinger, James J., Westler, William M., Markley, John L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651530/
https://www.ncbi.nlm.nih.gov/pubmed/23678341
http://dx.doi.org/10.1007/s11306-012-0490-9
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author Clos, Lawrence J.
Jofre, M. Fransisca
Ellinger, James J.
Westler, William M.
Markley, John L.
author_facet Clos, Lawrence J.
Jofre, M. Fransisca
Ellinger, James J.
Westler, William M.
Markley, John L.
author_sort Clos, Lawrence J.
collection PubMed
description To facilitate the high-throughput acquisition of nuclear magnetic resonance (NMR) experimental data on large sets of samples, we have developed a simple and straightforward automated methodology that capitalizes on recent advances in Bruker BioSpin NMR spectrometer hardware and software. Given the daunting challenge for non-NMR experts to collect quality spectra, our goal was to increase user accessibility, provide customized functionality, and improve the consistency and reliability of resultant data. This methodology, NMRbot, is encoded in a set of scripts written in the Python programming language accessible within the Bruker BioSpin TopSpin™ software. NMRbot improves automated data acquisition and offers novel tools for use in optimizing experimental parameters on the fly. This automated procedure has been successfully implemented for investigations in metabolomics, small-molecule library profiling, and protein–ligand titrations on four Bruker BioSpin NMR spectrometers at the National Magnetic Resonance Facility at Madison. The investigators reported benefits from ease of setup, improved spectral quality, convenient customizations, and overall time savings.
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spelling pubmed-36515302013-05-13 NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers Clos, Lawrence J. Jofre, M. Fransisca Ellinger, James J. Westler, William M. Markley, John L. Metabolomics Software/Database Article To facilitate the high-throughput acquisition of nuclear magnetic resonance (NMR) experimental data on large sets of samples, we have developed a simple and straightforward automated methodology that capitalizes on recent advances in Bruker BioSpin NMR spectrometer hardware and software. Given the daunting challenge for non-NMR experts to collect quality spectra, our goal was to increase user accessibility, provide customized functionality, and improve the consistency and reliability of resultant data. This methodology, NMRbot, is encoded in a set of scripts written in the Python programming language accessible within the Bruker BioSpin TopSpin™ software. NMRbot improves automated data acquisition and offers novel tools for use in optimizing experimental parameters on the fly. This automated procedure has been successfully implemented for investigations in metabolomics, small-molecule library profiling, and protein–ligand titrations on four Bruker BioSpin NMR spectrometers at the National Magnetic Resonance Facility at Madison. The investigators reported benefits from ease of setup, improved spectral quality, convenient customizations, and overall time savings. Springer US 2013-01-04 2013 /pmc/articles/PMC3651530/ /pubmed/23678341 http://dx.doi.org/10.1007/s11306-012-0490-9 Text en © The Author(s) 2013 https://creativecommons.org/licenses/by/2.0/ Open AccessThis article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Software/Database Article
Clos, Lawrence J.
Jofre, M. Fransisca
Ellinger, James J.
Westler, William M.
Markley, John L.
NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title_full NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title_fullStr NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title_full_unstemmed NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title_short NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers
title_sort nmrbot: python scripts enable high-throughput data collection on current bruker biospin nmr spectrometers
topic Software/Database Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651530/
https://www.ncbi.nlm.nih.gov/pubmed/23678341
http://dx.doi.org/10.1007/s11306-012-0490-9
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