Cargando…

Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis

BACKGROUND: Protein-protein interactions (PPIs) play crucial roles in the execution of various cellular processes and form the basis of biological mechanisms. Although large amount of PPIs data for different species has been generated by high-throughput experimental techniques, current PPI pairs obt...

Descripción completa

Detalles Bibliográficos
Autores principales:	You, Zhu-Hong, Lei, Ying-Ke, Zhu, Lin, Xia, Junfeng, Wang, Bing
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3654889/ https://www.ncbi.nlm.nih.gov/pubmed/23815620 http://dx.doi.org/10.1186/1471-2105-14-S8-S10

Ejemplares similares

Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set
por: You, Zhu-Hong, et al.
Publicado: (2014)

Identification of gene-gene interaction using principal components
por: Li, Jia, et al.
Publicado: (2009)

Exploring pleiotropy using principal components
por: Bensen, Jeannette T, et al.
Publicado: (2003)

Association tests based on the principal-component analysis
por: Oh, Sohee, et al.
Publicado: (2007)

Linkage and association analyses of principal components in expression data
por: Hinrichs, Anthony L, et al.
Publicado: (2007)

Linkage analysis using principal components of gene expression data
por: Atkinson, Elizabeth J, et al.
Publicado: (2007)

Assessing and predicting protein interactions by combining manifold embedding with multiple information integration
por: Lei, Ying-Ke, et al.
Publicado: (2012)

Principal components ancestry adjustment for Genetic Analysis Workshop 17 data
por: Jin, Jing, et al.
Publicado: (2011)

Supervised categorical principal component analysis for genome-wide association analyses
por: Lu, Meng, et al.
Publicado: (2014)

Clustering and principal-components approach based on heritability for mapping multiple gene expressions
por: Wang, Yuanjia, et al.
Publicado: (2007)

Prediction of RNA-binding amino acids from protein and RNA sequences
por: Choi, Sungwook, et al.
Publicado: (2011)

Ab initio detection of fuzzy amino acid tandem repeats in protein sequences
por: Pellegrini, Marco, et al.
Publicado: (2012)

Using Two-dimensional Principal Component Analysis and Rotation Forest for Prediction of Protein-Protein Interactions
por: Wang, Lei, et al.
Publicado: (2018)

Ensemble analysis of adaptive compressed genome sequencing strategies
por: Taghavi, Zeinab
Publicado: (2014)

Association analyses of the MAS-QTL data set using grammar, principal components and Bayesian network methodologies
por: Karacaören, Burak, et al.
Publicado: (2011)

Bivariate genome scans incorporating factor and principal component analyses to identify common genetic components of alcoholism, event-related potential, and electroencephalogram phenotypes
por: Lin, Jing-Ping, et al.
Publicado: (2005)

SPIDer: Saccharomyces protein-protein interaction database
por: Wu, Xiaomei, et al.
Publicado: (2006)

Combining least absolute shrinkage and selection operator (LASSO) and principal-components analysis for detection of gene-gene interactions in genome-wide association studies
por: D'Angelo, Gina M, et al.
Publicado: (2009)

Use of principal components to aggregate rare variants in case-control and family-based association studies in the presence of multiple covariates
por: Kazma, Rémi, et al.
Publicado: (2011)

A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies
por: Black, Mary Helen, et al.
Publicado: (2009)

SEM-EDS investigation on PM10 data collected in Central Italy: Principal Component Analysis and Hierarchical Cluster Analysis
por: Genga, Alessandra, et al.
Publicado: (2012)

Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning
por: Kaundal, Rakesh, et al.
Publicado: (2013)

Testing for associations between systolic blood pressure and single-nucleotide polymorphism profiles obtained from sparse principal component analysis
por: Bonner, Ashley, et al.
Publicado: (2014)

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information
por: Dai, Tianli, et al.
Publicado: (2011)

Comparison of methods for correcting population stratification in a genome-wide association study of rheumatoid arthritis: principal-component analysis versus multidimensional scaling
por: Wang, Dai, et al.
Publicado: (2009)

Predict impact of single amino acid change upon protein structure
por: Schaefer, Christian, et al.
Publicado: (2012)

Protein complex detection with semi-supervised learning in protein interaction networks
por: Shi, Lei, et al.
Publicado: (2011)

Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms
por: Nicodemus, Kristin K, et al.
Publicado: (2005)

Principal-component-based population structure adjustment in the North American Rheumatoid Arthritis Consortium data: impact of single-nucleotide polymorphism set and analysis method
por: Peloso, Gina M, et al.
Publicado: (2009)

Prediction of the functional class of metal-binding proteins from sequence derived physicochemical properties by support vector machine approach
por: Lin, HH, et al.
Publicado: (2006)

The Landscape of the Prion Protein's Structural Response to Mutation Revealed by Principal Component Analysis of Multiple NMR Ensembles
por: Gendoo, Deena M. A., et al.
Publicado: (2012)

LigandRFs: random forest ensemble to identify ligand-binding residues from sequence information alone
por: Chen, Peng, et al.
Publicado: (2014)

A Support Vector Machine based method to distinguish proteobacterial proteins from eukaryotic plant proteins
por: Verma, Ruchi, et al.
Publicado: (2012)

Intrinsic disorder in putative protein sequences
por: Midic, Uros, et al.
Publicado: (2012)

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs
por: Liu, Zhi-Ping, et al.
Publicado: (2012)

An ensemble approach for large-scale identification of protein-protein interactions using the alignments of multiple sequences
por: Wang, Lei, et al.
Publicado: (2016)

Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes
por: Gromiha, M Michael, et al.
Publicado: (2011)

Protein sequence classification using feature hashing
por: Caragea, Cornelia, et al.
Publicado: (2012)

Locating tandem repeats in weighted sequences in proteins
por: Zhang, Hui, et al.
Publicado: (2013)

Integrating protein-protein interactions and text mining for protein function prediction
por: Jaeger, Samira, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_ks2ejqc594evo03v01mgc4n8mi