Cargando…

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels

BACKGROUND: F(2) resource populations have been used extensively to map QTL segregating between pig breeds. A limitation associated with the use of these resource populations for fine mapping of QTL is the reduced number of founding individuals and recombinations of founding haplotypes occurring in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gualdrón Duarte, Jose L, Bates, Ronald O, Ernst, Catherine W, Raney, Nancy E, Cantet, Rodolfo JC, Steibel, Juan P
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655050/ https://www.ncbi.nlm.nih.gov/pubmed/23651538 http://dx.doi.org/10.1186/1471-2156-14-38

Ejemplares similares

Accuracy of Estimation of Genomic Breeding Values in Pigs Using Low-Density Genotypes and Imputation
por: Badke, Yvonne M., et al.
Publicado: (2014)

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations
por: Gualdrón Duarte, Jose L, et al.
Publicado: (2014)

Methods of tagSNP selection and other variables affecting imputation accuracy in swine
por: Badke, Yvonne M, et al.
Publicado: (2013)

Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
por: Ventura, Ricardo V., et al.
Publicado: (2016)

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels
por: Xiang, Tao, et al.
Publicado: (2015)

Design of low density SNP chips for genotype imputation in layer chicken
por: Herry, Florian, et al.
Publicado: (2018)

Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
por: Kriaridou, Christina, et al.
Publicado: (2023)

PHARP: a pig haplotype reference panel for genotype imputation
por: Wang, Zhen, et al.
Publicado: (2022)

Genotype imputation accuracy with different reference panels in admixed populations
por: Huang, Guan-Hua, et al.
Publicado: (2014)

Evaluation of imputation accuracy using the combination of two high-density panels in Nelore beef cattle
por: Bernardes, Priscila Arrigucci, et al.
Publicado: (2019)

Accuracy of genotype imputation based on reference population size and marker density in Hanwoo cattle
por: Lee, DooHo, et al.
Publicado: (2021)

Design of a Bovine Low-Density SNP Array Optimized for Imputation
por: Boichard, Didier, et al.
Publicado: (2012)

Impact of pre-imputation SNP-filtering on genotype imputation results
por: Roshyara, Nab Raj, et al.
Publicado: (2014)

Application of alternative models to identify QTL for growth traits in an F(2 )Duroc x Pietrain pig resource population
por: Choi, Igseo, et al.
Publicado: (2010)

Imputation of high-density genotypes in the Fleckvieh cattle population
por: Pausch, Hubert, et al.
Publicado: (2013)

The utility of low-density genotyping for imputation in the Thoroughbred horse
por: Corbin, Laura J, et al.
Publicado: (2014)

Identification of Carcass and Meat Quality QTL in an F(2) Duroc × Pietrain Pig Resource Population Using Different Least-Squares Analysis Models
por: Choi, Igseo, et al.
Publicado: (2011)

Efficiency and Power as a Function of Sequence Coverage, SNP Array Density, and Imputation
por: Flannick, Jason, et al.
Publicado: (2012)

Author Correction: PHARP: a pig haplotype reference panel for genotype imputation
por: Wang, Zhen, et al.
Publicado: (2022)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

Profiling and characterization of a longissimus dorsi muscle microRNA dataset from an F(2) Duroc × Pietrain pig resource population
por: Daza, Kaitlyn R., et al.
Publicado: (2017)

Replacement of microsatellite markers by imputed medium-density SNP arrays for parentage control in German warmblood horses
por: Nolte, Wietje, et al.
Publicado: (2022)

Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities
por: Whalen, Andrew, et al.
Publicado: (2019)

Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle
por: Daza, Kaitlyn R., et al.
Publicado: (2021)

Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs
por: Velez-Irizarry, Deborah, et al.
Publicado: (2019)

Fast accurate missing SNP genotype local imputation
por: Wang, Yining, et al.
Publicado: (2012)

Performance and accuracy evaluation of reference panels for genotype imputation in sub-Saharan African populations
por: Sengupta, Dhriti, et al.
Publicado: (2023)

High-density marker imputation accuracy in sixteen French cattle breeds
por: Hozé, Chris, et al.
Publicado: (2013)

Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals
por: Cleveland, Matthew A, et al.
Publicado: (2011)

Genomic prediction from observed and imputed high-density ovine genotypes
por: Moghaddar, Nasir, et al.
Publicado: (2017)

Association of Insulin-like growth factor binding protein 2 genotypes with growth, carcass and meat quality traits in pigs
por: Prasongsook, Sombat, et al.
Publicado: (2015)

Accuracy of genotype imputation in Nelore cattle
por: Carvalheiro, Roberto, et al.
Publicado: (2014)

Accuracy of genotype imputation in Labrador Retrievers
por: Friedrich, J., et al.
Publicado: (2018)

The SWine IMputation (SWIM) haplotype reference panel enables nucleotide resolution genetic mapping in pigs
por: Ding, Rongrong, et al.
Publicado: (2023)

Genomic inbreeding coefficients using imputed genotypes: assessing differences among SNP panels in Holstein-Friesian dairy cows
por: Dadousis, Christos, et al.
Publicado: (2023)

Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation
por: Gao, Yingjie, et al.
Publicado: (2020)

Rapid genotype imputation from sequence with reference panels
por: Davies, Robert W, et al.
Publicado: (2021)

Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens
por: Wang, Yuzhe, et al.
Publicado: (2017)

A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes
por: Hickey, John M, et al.
Publicado: (2011)

A diverse ancestrally-matched reference panel increases genotype imputation accuracy in a underrepresented population
por: Mauleekoonphairoj, John, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_sc3fl8lvp5b4l29mqidg5he59q