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Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae
The sequences of x-type high-molecular-weight glutenin promoter (x-HGP) from 21 diploid Triticeae species were cloned and sequenced. The lengths of x-HGP varied from 897 to 955 bp, and there are 329 variable sites including 105 singleton sites and 224 polymorphic sites. Genetic distances of pairwise...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing AG
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655216/ https://www.ncbi.nlm.nih.gov/pubmed/23687628 http://dx.doi.org/10.1186/2193-1801-2-152 |
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author | Jiang, Qian-Tao Zhao, Quan-Zhi Wang, Xiu-Ying Wang, Chang-Shui Zhao, Shan Cao, Xue Lan, Xiu-Jin Lu, Zhen-Xiang Zheng, You-Liang Wei, Yu-Ming |
author_facet | Jiang, Qian-Tao Zhao, Quan-Zhi Wang, Xiu-Ying Wang, Chang-Shui Zhao, Shan Cao, Xue Lan, Xiu-Jin Lu, Zhen-Xiang Zheng, You-Liang Wei, Yu-Ming |
author_sort | Jiang, Qian-Tao |
collection | PubMed |
description | The sequences of x-type high-molecular-weight glutenin promoter (x-HGP) from 21 diploid Triticeae species were cloned and sequenced. The lengths of x-HGP varied from 897 to 955 bp, and there are 329 variable sites including 105 singleton sites and 224 polymorphic sites. Genetic distances of pairwise X-HGP sequences ranged from 0.30 to 16.40% within 21 species and four outgroup species of Hordeum. All five recognized regulatory elements emerged and showed higher conservation in the x-HGP of 21 Triticeae species. Most variations were distributed in the regions among or between regulatory elements. A 22 bp and 50 bp insertions which were the copy of adjacent region with minor change, were found in the x-HGP of Ae. speltoides and Ps. Huashanica, and could be regarded as genome specific indels. The phylogeny of media-joining network and neighbour-joining tree both supported the topology were composed of three sperate clusters. Especially, the cluster I comprising the x-HGP sequences of Aegilops, Triticum, Henrardia, Agropyron and Taeniatherum was highly supporting by both network and NJ tree. As conferring to higher level and temporal and spatial expression, x-HGP can used as the source of promoter for constructing transgenic plants which allow endosperm-specific expression of exogenous gene on higher level. In addition, the x-HGP has enough conservation and variation; so it should be valuable in phylogenetic analyses of Triticeae family members. |
format | Online Article Text |
id | pubmed-3655216 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Springer International Publishing AG |
record_format | MEDLINE/PubMed |
spelling | pubmed-36552162013-05-16 Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae Jiang, Qian-Tao Zhao, Quan-Zhi Wang, Xiu-Ying Wang, Chang-Shui Zhao, Shan Cao, Xue Lan, Xiu-Jin Lu, Zhen-Xiang Zheng, You-Liang Wei, Yu-Ming Springerplus Research The sequences of x-type high-molecular-weight glutenin promoter (x-HGP) from 21 diploid Triticeae species were cloned and sequenced. The lengths of x-HGP varied from 897 to 955 bp, and there are 329 variable sites including 105 singleton sites and 224 polymorphic sites. Genetic distances of pairwise X-HGP sequences ranged from 0.30 to 16.40% within 21 species and four outgroup species of Hordeum. All five recognized regulatory elements emerged and showed higher conservation in the x-HGP of 21 Triticeae species. Most variations were distributed in the regions among or between regulatory elements. A 22 bp and 50 bp insertions which were the copy of adjacent region with minor change, were found in the x-HGP of Ae. speltoides and Ps. Huashanica, and could be regarded as genome specific indels. The phylogeny of media-joining network and neighbour-joining tree both supported the topology were composed of three sperate clusters. Especially, the cluster I comprising the x-HGP sequences of Aegilops, Triticum, Henrardia, Agropyron and Taeniatherum was highly supporting by both network and NJ tree. As conferring to higher level and temporal and spatial expression, x-HGP can used as the source of promoter for constructing transgenic plants which allow endosperm-specific expression of exogenous gene on higher level. In addition, the x-HGP has enough conservation and variation; so it should be valuable in phylogenetic analyses of Triticeae family members. Springer International Publishing AG 2013-04-10 /pmc/articles/PMC3655216/ /pubmed/23687628 http://dx.doi.org/10.1186/2193-1801-2-152 Text en © Jiang et al.; licensee Springer. 2013 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Jiang, Qian-Tao Zhao, Quan-Zhi Wang, Xiu-Ying Wang, Chang-Shui Zhao, Shan Cao, Xue Lan, Xiu-Jin Lu, Zhen-Xiang Zheng, You-Liang Wei, Yu-Ming Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title | Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title_full | Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title_fullStr | Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title_full_unstemmed | Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title_short | Characterization of x-type high-molecular-weight glutenin promoters (x-HGP) from different genomes in Triticeae |
title_sort | characterization of x-type high-molecular-weight glutenin promoters (x-hgp) from different genomes in triticeae |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655216/ https://www.ncbi.nlm.nih.gov/pubmed/23687628 http://dx.doi.org/10.1186/2193-1801-2-152 |
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