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ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria

Extremophiles are the microorganisms which can survive under extreme conditions of temperature, pressure, pH, salinity etc. They have gained much attention for their potential role in biotechnological and industrial applications. The large amount of experimental data in the literature is so diverse,...

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Autores principales: Majhi, Manash Chandra, Behera, Abhisek Kumar, Kulshreshtha, Niha Mohan, Mahmooduzafar, Dr., Kumar, Rita, Kumar, Anil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3656046/
https://www.ncbi.nlm.nih.gov/pubmed/23696792
http://dx.doi.org/10.1371/journal.pone.0063083
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author Majhi, Manash Chandra
Behera, Abhisek Kumar
Kulshreshtha, Niha Mohan
Mahmooduzafar, Dr.
Kumar, Rita
Kumar, Anil
author_facet Majhi, Manash Chandra
Behera, Abhisek Kumar
Kulshreshtha, Niha Mohan
Mahmooduzafar, Dr.
Kumar, Rita
Kumar, Anil
author_sort Majhi, Manash Chandra
collection PubMed
description Extremophiles are the microorganisms which can survive under extreme conditions of temperature, pressure, pH, salinity etc. They have gained much attention for their potential role in biotechnological and industrial applications. The large amount of experimental data in the literature is so diverse, that it becomes difficult and time consuming for the researcher to implement it in various areas of research. Therefore, a systematic arrangement of data and redirection in a similar fashion through web interface can assist researchers in analyzing the data as per their requirement. ExtremeDB is a freely available web based relational database which integrates general characteristics, genome-proteome information, industrial applications and recent scientific investigations of the seven major groups of 865 extremophillic microorganisms. The search options are user friendly and analyses tools such as Compare and Extreme BLAST have been incorporated for comparative analysis of two or more extremophiles and determining the sequence similarity of a given protein/nucleotide in relation to other extremophiles respectively. The effort put forth herein in the form of database, would open up new avenues on the potential utility of extremophiles in applied research. ExtremeDB is freely accessible via http://extrem.igib.res.in.
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spelling pubmed-36560462013-05-21 ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria Majhi, Manash Chandra Behera, Abhisek Kumar Kulshreshtha, Niha Mohan Mahmooduzafar, Dr. Kumar, Rita Kumar, Anil PLoS One Research Article Extremophiles are the microorganisms which can survive under extreme conditions of temperature, pressure, pH, salinity etc. They have gained much attention for their potential role in biotechnological and industrial applications. The large amount of experimental data in the literature is so diverse, that it becomes difficult and time consuming for the researcher to implement it in various areas of research. Therefore, a systematic arrangement of data and redirection in a similar fashion through web interface can assist researchers in analyzing the data as per their requirement. ExtremeDB is a freely available web based relational database which integrates general characteristics, genome-proteome information, industrial applications and recent scientific investigations of the seven major groups of 865 extremophillic microorganisms. The search options are user friendly and analyses tools such as Compare and Extreme BLAST have been incorporated for comparative analysis of two or more extremophiles and determining the sequence similarity of a given protein/nucleotide in relation to other extremophiles respectively. The effort put forth herein in the form of database, would open up new avenues on the potential utility of extremophiles in applied research. ExtremeDB is freely accessible via http://extrem.igib.res.in. Public Library of Science 2013-05-16 /pmc/articles/PMC3656046/ /pubmed/23696792 http://dx.doi.org/10.1371/journal.pone.0063083 Text en © 2013 Majhi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Majhi, Manash Chandra
Behera, Abhisek Kumar
Kulshreshtha, Niha Mohan
Mahmooduzafar, Dr.
Kumar, Rita
Kumar, Anil
ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title_full ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title_fullStr ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title_full_unstemmed ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title_short ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria
title_sort extremedb: a unified web repository of extremophilic archaea and bacteria
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3656046/
https://www.ncbi.nlm.nih.gov/pubmed/23696792
http://dx.doi.org/10.1371/journal.pone.0063083
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