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Use of intensity quotients and differences in absolute structure refinement
Several methods for absolute structure refinement were tested using single-crystal X-ray diffraction data collected using Cu Kα radiation for 23 crystals with no element heavier than oxygen: conventional refinement using an inversion twin model, estimation using intensity quotients in SHELXL2012, es...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661305/ https://www.ncbi.nlm.nih.gov/pubmed/23719469 http://dx.doi.org/10.1107/S2052519213010014 |
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author | Parsons, Simon Flack, Howard D. Wagner, Trixie |
author_facet | Parsons, Simon Flack, Howard D. Wagner, Trixie |
author_sort | Parsons, Simon |
collection | PubMed |
description | Several methods for absolute structure refinement were tested using single-crystal X-ray diffraction data collected using Cu Kα radiation for 23 crystals with no element heavier than oxygen: conventional refinement using an inversion twin model, estimation using intensity quotients in SHELXL2012, estimation using Bayesian methods in PLATON, estimation using restraints consisting of numerical intensity differences in CRYSTALS and estimation using differences and quotients in TOPAS-Academic where both quantities were coded in terms of other structural parameters and implemented as restraints. The conventional refinement approach yielded accurate values of the Flack parameter, but with standard uncertainties ranging from 0.15 to 0.77. The other methods also yielded accurate values of the Flack parameter, but with much higher precision. Absolute structure was established in all cases, even for a hydrocarbon. The procedures in which restraints are coded explicitly in terms of other structural parameters enable the Flack parameter to correlate with these other parameters, so that it is determined along with those parameters during refinement. |
format | Online Article Text |
id | pubmed-3661305 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-36613052013-06-19 Use of intensity quotients and differences in absolute structure refinement Parsons, Simon Flack, Howard D. Wagner, Trixie Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Several methods for absolute structure refinement were tested using single-crystal X-ray diffraction data collected using Cu Kα radiation for 23 crystals with no element heavier than oxygen: conventional refinement using an inversion twin model, estimation using intensity quotients in SHELXL2012, estimation using Bayesian methods in PLATON, estimation using restraints consisting of numerical intensity differences in CRYSTALS and estimation using differences and quotients in TOPAS-Academic where both quantities were coded in terms of other structural parameters and implemented as restraints. The conventional refinement approach yielded accurate values of the Flack parameter, but with standard uncertainties ranging from 0.15 to 0.77. The other methods also yielded accurate values of the Flack parameter, but with much higher precision. Absolute structure was established in all cases, even for a hydrocarbon. The procedures in which restraints are coded explicitly in terms of other structural parameters enable the Flack parameter to correlate with these other parameters, so that it is determined along with those parameters during refinement. International Union of Crystallography 2013-05-17 /pmc/articles/PMC3661305/ /pubmed/23719469 http://dx.doi.org/10.1107/S2052519213010014 Text en © Simon Parsons et al. 2013 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Parsons, Simon Flack, Howard D. Wagner, Trixie Use of intensity quotients and differences in absolute structure refinement |
title | Use of intensity quotients and differences in absolute structure refinement |
title_full | Use of intensity quotients and differences in absolute structure refinement |
title_fullStr | Use of intensity quotients and differences in absolute structure refinement |
title_full_unstemmed | Use of intensity quotients and differences in absolute structure refinement |
title_short | Use of intensity quotients and differences in absolute structure refinement |
title_sort | use of intensity quotients and differences in absolute structure refinement |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661305/ https://www.ncbi.nlm.nih.gov/pubmed/23719469 http://dx.doi.org/10.1107/S2052519213010014 |
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