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Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community

Knowledge about the biogeography of organisms has long been a focus in ecological research, including the mechanisms that generate and maintain diversity. In this study, we targeted a microbial group relatively underrepresented in the microbial biogeographic literature, the soil Archaea. We surveyed...

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Autores principales: Zheng, Yuan-Ming, Cao, Peng, Fu, Bojie, Hughes, Jane M., He, Ji-Zheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661566/
https://www.ncbi.nlm.nih.gov/pubmed/23717418
http://dx.doi.org/10.1371/journal.pone.0063375
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author Zheng, Yuan-Ming
Cao, Peng
Fu, Bojie
Hughes, Jane M.
He, Ji-Zheng
author_facet Zheng, Yuan-Ming
Cao, Peng
Fu, Bojie
Hughes, Jane M.
He, Ji-Zheng
author_sort Zheng, Yuan-Ming
collection PubMed
description Knowledge about the biogeography of organisms has long been a focus in ecological research, including the mechanisms that generate and maintain diversity. In this study, we targeted a microbial group relatively underrepresented in the microbial biogeographic literature, the soil Archaea. We surveyed the archaeal abundance and community composition using real-time quantitative PCR and T-RFLP approaches for 105 soil samples from 2 habitat types to identify the archaeal distribution patterns and factors driving these patterns. Results showed that the soil archaeal community was affected by spatial and environmental variables, and 79% and 51% of the community variation was explained in the non-flooded soil (NS) and flooded soil (FS) habitat, respectively, showing its possible biogeographic distribution. The diversity patterns of soil Archaea across the landscape were influenced by a combination of stochastic and deterministic processes. The contribution from neutral processes was higher than that from deterministic processes associated with environmental variables. The variables pH, sample depth and longitude played key roles in determining the archaeal distribution in the NS habitat, while sampling depth, longitude and NH(4) (+)-N were most important in the FS habitat. Overall, there might be similar ecological drivers in the soil archaeal community as in macroorganism communities.
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spelling pubmed-36615662013-05-28 Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community Zheng, Yuan-Ming Cao, Peng Fu, Bojie Hughes, Jane M. He, Ji-Zheng PLoS One Research Article Knowledge about the biogeography of organisms has long been a focus in ecological research, including the mechanisms that generate and maintain diversity. In this study, we targeted a microbial group relatively underrepresented in the microbial biogeographic literature, the soil Archaea. We surveyed the archaeal abundance and community composition using real-time quantitative PCR and T-RFLP approaches for 105 soil samples from 2 habitat types to identify the archaeal distribution patterns and factors driving these patterns. Results showed that the soil archaeal community was affected by spatial and environmental variables, and 79% and 51% of the community variation was explained in the non-flooded soil (NS) and flooded soil (FS) habitat, respectively, showing its possible biogeographic distribution. The diversity patterns of soil Archaea across the landscape were influenced by a combination of stochastic and deterministic processes. The contribution from neutral processes was higher than that from deterministic processes associated with environmental variables. The variables pH, sample depth and longitude played key roles in determining the archaeal distribution in the NS habitat, while sampling depth, longitude and NH(4) (+)-N were most important in the FS habitat. Overall, there might be similar ecological drivers in the soil archaeal community as in macroorganism communities. Public Library of Science 2013-05-22 /pmc/articles/PMC3661566/ /pubmed/23717418 http://dx.doi.org/10.1371/journal.pone.0063375 Text en © 2013 Zheng et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Zheng, Yuan-Ming
Cao, Peng
Fu, Bojie
Hughes, Jane M.
He, Ji-Zheng
Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title_full Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title_fullStr Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title_full_unstemmed Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title_short Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
title_sort ecological drivers of biogeographic patterns of soil archaeal community
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661566/
https://www.ncbi.nlm.nih.gov/pubmed/23717418
http://dx.doi.org/10.1371/journal.pone.0063375
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