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Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer

INTRODUCTION: Vitamin D deficiency has been associated with increased risk of colorectal cancer (CRC), but causal relationship has not yet been confirmed. We investigate the direction of causation between vitamin D and CRC by extending the conventional approaches to allow pleiotropic relationships a...

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Autores principales: Zgaga, Lina, Agakov, Felix, Theodoratou, Evropi, Farrington, Susan M., Tenesa, Albert, Dunlop, Malcolm G., McKeigue, Paul, Campbell, Harry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663843/
https://www.ncbi.nlm.nih.gov/pubmed/23717431
http://dx.doi.org/10.1371/journal.pone.0063475
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author Zgaga, Lina
Agakov, Felix
Theodoratou, Evropi
Farrington, Susan M.
Tenesa, Albert
Dunlop, Malcolm G.
McKeigue, Paul
Campbell, Harry
author_facet Zgaga, Lina
Agakov, Felix
Theodoratou, Evropi
Farrington, Susan M.
Tenesa, Albert
Dunlop, Malcolm G.
McKeigue, Paul
Campbell, Harry
author_sort Zgaga, Lina
collection PubMed
description INTRODUCTION: Vitamin D deficiency has been associated with increased risk of colorectal cancer (CRC), but causal relationship has not yet been confirmed. We investigate the direction of causation between vitamin D and CRC by extending the conventional approaches to allow pleiotropic relationships and by explicitly modelling unmeasured confounders. METHODS: Plasma 25-hydroxyvitamin D (25-OHD), genetic variants associated with 25-OHD and CRC, and other relevant information was available for 2645 individuals (1057 CRC cases and 1588 controls) and included in the model. We investigate whether 25-OHD is likely to be causally associated with CRC, or vice versa, by selecting the best modelling hypothesis according to Bayesian predictive scores. We examine consistency for a range of prior assumptions. RESULTS: Model comparison showed preference for the causal association between low 25-OHD and CRC over the reverse causal hypothesis. This was confirmed for posterior mean deviances obtained for both models (11.5 natural log units in favour of the causal model), and also for deviance information criteria (DIC) computed for a range of prior distributions. Overall, models ignoring hidden confounding or pleiotropy had significantly poorer DIC scores. CONCLUSION: Results suggest causal association between 25-OHD and colorectal cancer, and support the need for randomised clinical trials for further confirmations.
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spelling pubmed-36638432013-05-28 Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer Zgaga, Lina Agakov, Felix Theodoratou, Evropi Farrington, Susan M. Tenesa, Albert Dunlop, Malcolm G. McKeigue, Paul Campbell, Harry PLoS One Research Article INTRODUCTION: Vitamin D deficiency has been associated with increased risk of colorectal cancer (CRC), but causal relationship has not yet been confirmed. We investigate the direction of causation between vitamin D and CRC by extending the conventional approaches to allow pleiotropic relationships and by explicitly modelling unmeasured confounders. METHODS: Plasma 25-hydroxyvitamin D (25-OHD), genetic variants associated with 25-OHD and CRC, and other relevant information was available for 2645 individuals (1057 CRC cases and 1588 controls) and included in the model. We investigate whether 25-OHD is likely to be causally associated with CRC, or vice versa, by selecting the best modelling hypothesis according to Bayesian predictive scores. We examine consistency for a range of prior assumptions. RESULTS: Model comparison showed preference for the causal association between low 25-OHD and CRC over the reverse causal hypothesis. This was confirmed for posterior mean deviances obtained for both models (11.5 natural log units in favour of the causal model), and also for deviance information criteria (DIC) computed for a range of prior distributions. Overall, models ignoring hidden confounding or pleiotropy had significantly poorer DIC scores. CONCLUSION: Results suggest causal association between 25-OHD and colorectal cancer, and support the need for randomised clinical trials for further confirmations. Public Library of Science 2013-05-24 /pmc/articles/PMC3663843/ /pubmed/23717431 http://dx.doi.org/10.1371/journal.pone.0063475 Text en © 2013 Zgaga et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Zgaga, Lina
Agakov, Felix
Theodoratou, Evropi
Farrington, Susan M.
Tenesa, Albert
Dunlop, Malcolm G.
McKeigue, Paul
Campbell, Harry
Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title_full Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title_fullStr Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title_full_unstemmed Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title_short Model Selection Approach Suggests Causal Association between 25-Hydroxyvitamin D and Colorectal Cancer
title_sort model selection approach suggests causal association between 25-hydroxyvitamin d and colorectal cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3663843/
https://www.ncbi.nlm.nih.gov/pubmed/23717431
http://dx.doi.org/10.1371/journal.pone.0063475
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