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Complex expression dynamics and robustness in C. elegans insulin networks

Gene families expand by gene duplication, and resulting paralogs diverge through mutation. Functional diversification can include neofunctionalization as well as subfunctionalization of ancestral functions. In addition, redundancy in which multiple genes fulfill overlapping functions is often mainta...

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Autores principales: Ritter, Ashlyn D., Shen, Yuan, Fuxman Bass, Juan, Jeyaraj, Sankarganesh, Deplancke, Bart, Mukhopadhyay, Arnab, Xu, Jian, Driscoll, Monica, Tissenbaum, Heidi A., Walhout, Albertha J.M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668363/
https://www.ncbi.nlm.nih.gov/pubmed/23539137
http://dx.doi.org/10.1101/gr.150466.112
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author Ritter, Ashlyn D.
Shen, Yuan
Fuxman Bass, Juan
Jeyaraj, Sankarganesh
Deplancke, Bart
Mukhopadhyay, Arnab
Xu, Jian
Driscoll, Monica
Tissenbaum, Heidi A.
Walhout, Albertha J.M.
author_facet Ritter, Ashlyn D.
Shen, Yuan
Fuxman Bass, Juan
Jeyaraj, Sankarganesh
Deplancke, Bart
Mukhopadhyay, Arnab
Xu, Jian
Driscoll, Monica
Tissenbaum, Heidi A.
Walhout, Albertha J.M.
author_sort Ritter, Ashlyn D.
collection PubMed
description Gene families expand by gene duplication, and resulting paralogs diverge through mutation. Functional diversification can include neofunctionalization as well as subfunctionalization of ancestral functions. In addition, redundancy in which multiple genes fulfill overlapping functions is often maintained. Here, we use the family of 40 Caenorhabditis elegans insulins to gain insight into the balance between specificity and redundancy. The insulin/insulin-like growth factor (IIS) pathway comprises a single receptor, DAF-2. To date, no single insulin-like peptide recapitulates all DAF-2-associated phenotypes, likely due to redundancy between insulin-like genes. To provide a first-level annotation of potential patterns of redundancy, we comprehensively delineate the spatiotemporal and conditional expression of all 40 insulins in living animals. We observe extensive dynamics in expression that can explain the lack of simple patterns of pairwise redundancy. We propose a model in which gene families evolve to attain differential alliances in different tissues and in response to a range of environmental stresses.
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spelling pubmed-36683632013-12-01 Complex expression dynamics and robustness in C. elegans insulin networks Ritter, Ashlyn D. Shen, Yuan Fuxman Bass, Juan Jeyaraj, Sankarganesh Deplancke, Bart Mukhopadhyay, Arnab Xu, Jian Driscoll, Monica Tissenbaum, Heidi A. Walhout, Albertha J.M. Genome Res Research Gene families expand by gene duplication, and resulting paralogs diverge through mutation. Functional diversification can include neofunctionalization as well as subfunctionalization of ancestral functions. In addition, redundancy in which multiple genes fulfill overlapping functions is often maintained. Here, we use the family of 40 Caenorhabditis elegans insulins to gain insight into the balance between specificity and redundancy. The insulin/insulin-like growth factor (IIS) pathway comprises a single receptor, DAF-2. To date, no single insulin-like peptide recapitulates all DAF-2-associated phenotypes, likely due to redundancy between insulin-like genes. To provide a first-level annotation of potential patterns of redundancy, we comprehensively delineate the spatiotemporal and conditional expression of all 40 insulins in living animals. We observe extensive dynamics in expression that can explain the lack of simple patterns of pairwise redundancy. We propose a model in which gene families evolve to attain differential alliances in different tissues and in response to a range of environmental stresses. Cold Spring Harbor Laboratory Press 2013-06 /pmc/articles/PMC3668363/ /pubmed/23539137 http://dx.doi.org/10.1101/gr.150466.112 Text en © 2013, Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/3.0/ This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 3.0 Unported License), as described at http://creativecommons.org/licenses/by-nc/3.0/.
spellingShingle Research
Ritter, Ashlyn D.
Shen, Yuan
Fuxman Bass, Juan
Jeyaraj, Sankarganesh
Deplancke, Bart
Mukhopadhyay, Arnab
Xu, Jian
Driscoll, Monica
Tissenbaum, Heidi A.
Walhout, Albertha J.M.
Complex expression dynamics and robustness in C. elegans insulin networks
title Complex expression dynamics and robustness in C. elegans insulin networks
title_full Complex expression dynamics and robustness in C. elegans insulin networks
title_fullStr Complex expression dynamics and robustness in C. elegans insulin networks
title_full_unstemmed Complex expression dynamics and robustness in C. elegans insulin networks
title_short Complex expression dynamics and robustness in C. elegans insulin networks
title_sort complex expression dynamics and robustness in c. elegans insulin networks
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668363/
https://www.ncbi.nlm.nih.gov/pubmed/23539137
http://dx.doi.org/10.1101/gr.150466.112
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