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Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish
As populations diverge, genomic regions associated with adaptation display elevated differentiation. These genomic islands of adaptive divergence can inform conservation efforts in exploited species, by refining the delineation of management units, and providing genomic tools for more precise and ef...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3673473/ https://www.ncbi.nlm.nih.gov/pubmed/23745137 http://dx.doi.org/10.1111/eva.12026 |
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author | Bradbury, Ian R Hubert, Sophie Higgins, Brent Bowman, Sharen Borza, Tudor Paterson, Ian G Snelgrove, Paul V R Morris, Corey J Gregory, Robert S Hardie, David Hutchings, Jeffrey A Ruzzante, Daniel E Taggart, Christopher T Bentzen, Paul |
author_facet | Bradbury, Ian R Hubert, Sophie Higgins, Brent Bowman, Sharen Borza, Tudor Paterson, Ian G Snelgrove, Paul V R Morris, Corey J Gregory, Robert S Hardie, David Hutchings, Jeffrey A Ruzzante, Daniel E Taggart, Christopher T Bentzen, Paul |
author_sort | Bradbury, Ian R |
collection | PubMed |
description | As populations diverge, genomic regions associated with adaptation display elevated differentiation. These genomic islands of adaptive divergence can inform conservation efforts in exploited species, by refining the delineation of management units, and providing genomic tools for more precise and effective population monitoring and the successful assignment of individuals and products. We explored heterogeneity in genomic divergence and its impact on the resolution of spatial population structure in exploited populations of Atlantic cod, Gadus morhua, using genome wide expressed sequence derived single nucleotide polymorphisms in 466 individuals sampled across the range. Outlier tests identified elevated divergence at 5.2% of SNPs, consistent with directional selection in one-third of linkage groups. Genomic regions of elevated divergence ranged in size from a single position to several cM. Structuring at neutral loci was associated with geographic features, whereas outlier SNPs revealed genetic discontinuities in both the eastern and western Atlantic. This fine-scale geographic differentiation enhanced assignment to region of origin, and through the identification of adaptive diversity, fundamentally changes how these populations should be conserved. This work demonstrates the utility of genome scans for adaptive divergence in the delineation of stock structure, the traceability of individuals and products, and ultimately a role for population genomics in fisheries conservation. |
format | Online Article Text |
id | pubmed-3673473 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-36734732013-06-06 Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish Bradbury, Ian R Hubert, Sophie Higgins, Brent Bowman, Sharen Borza, Tudor Paterson, Ian G Snelgrove, Paul V R Morris, Corey J Gregory, Robert S Hardie, David Hutchings, Jeffrey A Ruzzante, Daniel E Taggart, Christopher T Bentzen, Paul Evol Appl Original Article As populations diverge, genomic regions associated with adaptation display elevated differentiation. These genomic islands of adaptive divergence can inform conservation efforts in exploited species, by refining the delineation of management units, and providing genomic tools for more precise and effective population monitoring and the successful assignment of individuals and products. We explored heterogeneity in genomic divergence and its impact on the resolution of spatial population structure in exploited populations of Atlantic cod, Gadus morhua, using genome wide expressed sequence derived single nucleotide polymorphisms in 466 individuals sampled across the range. Outlier tests identified elevated divergence at 5.2% of SNPs, consistent with directional selection in one-third of linkage groups. Genomic regions of elevated divergence ranged in size from a single position to several cM. Structuring at neutral loci was associated with geographic features, whereas outlier SNPs revealed genetic discontinuities in both the eastern and western Atlantic. This fine-scale geographic differentiation enhanced assignment to region of origin, and through the identification of adaptive diversity, fundamentally changes how these populations should be conserved. This work demonstrates the utility of genome scans for adaptive divergence in the delineation of stock structure, the traceability of individuals and products, and ultimately a role for population genomics in fisheries conservation. Blackwell Publishing Ltd 2013-04 2013-01-21 /pmc/articles/PMC3673473/ /pubmed/23745137 http://dx.doi.org/10.1111/eva.12026 Text en Journal compilation © 2013 Blackwell Publishing Ltd http://creativecommons.org/licenses/by/2.5/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Bradbury, Ian R Hubert, Sophie Higgins, Brent Bowman, Sharen Borza, Tudor Paterson, Ian G Snelgrove, Paul V R Morris, Corey J Gregory, Robert S Hardie, David Hutchings, Jeffrey A Ruzzante, Daniel E Taggart, Christopher T Bentzen, Paul Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title | Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title_full | Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title_fullStr | Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title_full_unstemmed | Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title_short | Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
title_sort | genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3673473/ https://www.ncbi.nlm.nih.gov/pubmed/23745137 http://dx.doi.org/10.1111/eva.12026 |
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