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Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions
INTRODUCTION: The notion of local scale was introduced to characterize varying levels of image detail so that localized image processing tasks could be performed while simultaneously yielding a globally optimal result. In this paper, we have presented the methodological framework for a novel locally...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Medknow Publications & Media Pvt Ltd
2013
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3678744/ https://www.ncbi.nlm.nih.gov/pubmed/23766944 http://dx.doi.org/10.4103/2153-3539.109865 |
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author | Janowczyk, Andrew Chandran, Sharat Madabhushi, Anant |
author_facet | Janowczyk, Andrew Chandran, Sharat Madabhushi, Anant |
author_sort | Janowczyk, Andrew |
collection | PubMed |
description | INTRODUCTION: The notion of local scale was introduced to characterize varying levels of image detail so that localized image processing tasks could be performed while simultaneously yielding a globally optimal result. In this paper, we have presented the methodological framework for a novel locally adaptive scale definition, morphologic scale (MS), which is different from extant local scale definitions in that it attempts to characterize local heterogeneity as opposed to local homogeneity. METHODS: At every point of interest, the MS is determined as a series of radial paths extending outward in the direction of least resistance, navigating around obstructions. Each pixel can then be directly compared to other points of interest via a rotationally invariant quantitative feature descriptor, determined by the application of Fourier descriptors to the collection of these paths. RESULTS: Our goal is to distinguish tumor and stromal tissue classes in the context of four different digitized pathology datasets: prostate tissue microarrays (TMAs) stained with hematoxylin and eosin (HE) (44 images) and TMAs stained with only hematoxylin (H) (44 images), slide mounts of ovarian H (60 images), and HE breast cancer (51 images) histology images. Classification performance over 50 cross-validation runs using a Bayesian classifier produced mean areas under the curve of 0.88 ± 0.01 (prostate HE), 0.87 ± 0.02 (prostate H), 0.88 ± 0.01 (ovarian H), and 0.80 ± 0.01 (breast HE). CONCLUSION: For each dataset listed in Table 3, we randomly selected 100 points per image, and using the procedure described in Experiment 1, we attempted to separate them as belonging to stroma or epithelium. |
format | Online Article Text |
id | pubmed-3678744 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-36787442013-06-13 Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions Janowczyk, Andrew Chandran, Sharat Madabhushi, Anant J Pathol Inform Symposium - Original Research INTRODUCTION: The notion of local scale was introduced to characterize varying levels of image detail so that localized image processing tasks could be performed while simultaneously yielding a globally optimal result. In this paper, we have presented the methodological framework for a novel locally adaptive scale definition, morphologic scale (MS), which is different from extant local scale definitions in that it attempts to characterize local heterogeneity as opposed to local homogeneity. METHODS: At every point of interest, the MS is determined as a series of radial paths extending outward in the direction of least resistance, navigating around obstructions. Each pixel can then be directly compared to other points of interest via a rotationally invariant quantitative feature descriptor, determined by the application of Fourier descriptors to the collection of these paths. RESULTS: Our goal is to distinguish tumor and stromal tissue classes in the context of four different digitized pathology datasets: prostate tissue microarrays (TMAs) stained with hematoxylin and eosin (HE) (44 images) and TMAs stained with only hematoxylin (H) (44 images), slide mounts of ovarian H (60 images), and HE breast cancer (51 images) histology images. Classification performance over 50 cross-validation runs using a Bayesian classifier produced mean areas under the curve of 0.88 ± 0.01 (prostate HE), 0.87 ± 0.02 (prostate H), 0.88 ± 0.01 (ovarian H), and 0.80 ± 0.01 (breast HE). CONCLUSION: For each dataset listed in Table 3, we randomly selected 100 points per image, and using the procedure described in Experiment 1, we attempted to separate them as belonging to stroma or epithelium. Medknow Publications & Media Pvt Ltd 2013-03-30 /pmc/articles/PMC3678744/ /pubmed/23766944 http://dx.doi.org/10.4103/2153-3539.109865 Text en Copyright: © 2013 Janowczyk A. http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Symposium - Original Research Janowczyk, Andrew Chandran, Sharat Madabhushi, Anant Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title | Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title_full | Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title_fullStr | Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title_full_unstemmed | Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title_short | Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions |
title_sort | quantifying local heterogeneity via morphologic scale: distinguishing tumoral from stromal regions |
topic | Symposium - Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3678744/ https://www.ncbi.nlm.nih.gov/pubmed/23766944 http://dx.doi.org/10.4103/2153-3539.109865 |
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