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Assessing Paleo-Biodiversity Using Low Proxy Influx

We developed an algorithm to improve richness assessment based on paleoecological series, considering sample features such as their temporal resolutions or their volumes. Our new method can be applied to both high- and low-count size proxies, i.e. pollen and plant macroremain records, respectively....

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Detalles Bibliográficos
Autores principales: Blarquez, Olivier, Finsinger, Walter, Carcaillet, Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3679118/
https://www.ncbi.nlm.nih.gov/pubmed/23776556
http://dx.doi.org/10.1371/journal.pone.0065852
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author Blarquez, Olivier
Finsinger, Walter
Carcaillet, Christopher
author_facet Blarquez, Olivier
Finsinger, Walter
Carcaillet, Christopher
author_sort Blarquez, Olivier
collection PubMed
description We developed an algorithm to improve richness assessment based on paleoecological series, considering sample features such as their temporal resolutions or their volumes. Our new method can be applied to both high- and low-count size proxies, i.e. pollen and plant macroremain records, respectively. While pollen generally abounds in sediments, plant macroremains are generally rare, thus leading to difficulties to compute paleo-biodiversity indices. Our approach uses resampled macroremain influxes that enable the computation of the rarefaction index for the low influx records. The raw counts are resampled to a constant resolution and sample volume by interpolating initial sample ages at a constant time interval using the age∼depth model. Then, the contribution of initial counts and volume to each interpolated sample is determined by calculating a proportion matrix that is in turn used to obtain regularly spaced time series of pollen and macroremain influx. We applied this algorithm to sedimentary data from a subalpine lake situated in the European Alps. The reconstructed total floristic richness at the study site increased gradually when both pollen and macroremain records indicated a decrease in relative abundances of shrubs and an increase in trees from 11,000 to 7,000 cal BP. This points to an ecosystem change that favored trees against shrubs, whereas herb abundance remained stable. Since 6,000 cal BP, local richness decreased based on plant macroremains, while pollen-based richness was stable. The reconstructed richness and evenness are interrelated confirming the difficulty to distinguish these two aspects for the studies in paleo-biodiversity. The present study shows that low-influx bio-proxy records (here macroremains) can be used to reconstruct stand diversity and address ecological issues. These developments on macroremain and pollen records may contribute to bridge the gap between paleoecology and biodiversity studies.
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spelling pubmed-36791182013-06-17 Assessing Paleo-Biodiversity Using Low Proxy Influx Blarquez, Olivier Finsinger, Walter Carcaillet, Christopher PLoS One Research Article We developed an algorithm to improve richness assessment based on paleoecological series, considering sample features such as their temporal resolutions or their volumes. Our new method can be applied to both high- and low-count size proxies, i.e. pollen and plant macroremain records, respectively. While pollen generally abounds in sediments, plant macroremains are generally rare, thus leading to difficulties to compute paleo-biodiversity indices. Our approach uses resampled macroremain influxes that enable the computation of the rarefaction index for the low influx records. The raw counts are resampled to a constant resolution and sample volume by interpolating initial sample ages at a constant time interval using the age∼depth model. Then, the contribution of initial counts and volume to each interpolated sample is determined by calculating a proportion matrix that is in turn used to obtain regularly spaced time series of pollen and macroremain influx. We applied this algorithm to sedimentary data from a subalpine lake situated in the European Alps. The reconstructed total floristic richness at the study site increased gradually when both pollen and macroremain records indicated a decrease in relative abundances of shrubs and an increase in trees from 11,000 to 7,000 cal BP. This points to an ecosystem change that favored trees against shrubs, whereas herb abundance remained stable. Since 6,000 cal BP, local richness decreased based on plant macroremains, while pollen-based richness was stable. The reconstructed richness and evenness are interrelated confirming the difficulty to distinguish these two aspects for the studies in paleo-biodiversity. The present study shows that low-influx bio-proxy records (here macroremains) can be used to reconstruct stand diversity and address ecological issues. These developments on macroremain and pollen records may contribute to bridge the gap between paleoecology and biodiversity studies. Public Library of Science 2013-06-11 /pmc/articles/PMC3679118/ /pubmed/23776556 http://dx.doi.org/10.1371/journal.pone.0065852 Text en © 2013 Blarquez et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Blarquez, Olivier
Finsinger, Walter
Carcaillet, Christopher
Assessing Paleo-Biodiversity Using Low Proxy Influx
title Assessing Paleo-Biodiversity Using Low Proxy Influx
title_full Assessing Paleo-Biodiversity Using Low Proxy Influx
title_fullStr Assessing Paleo-Biodiversity Using Low Proxy Influx
title_full_unstemmed Assessing Paleo-Biodiversity Using Low Proxy Influx
title_short Assessing Paleo-Biodiversity Using Low Proxy Influx
title_sort assessing paleo-biodiversity using low proxy influx
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3679118/
https://www.ncbi.nlm.nih.gov/pubmed/23776556
http://dx.doi.org/10.1371/journal.pone.0065852
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