Cargando…

A novel method for cross-species gene expression analysis

BACKGROUND: Analysis of gene expression from different species is a powerful way to identify evolutionarily conserved transcriptional responses. However, due to evolutionary events such as gene duplication, there is no one-to-one correspondence between genes from different species which makes compar...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kristiansson, Erik, Österlund, Tobias, Gunnarsson, Lina, Arne, Gabriella, Joakim Larsson, D G, Nerman, Olle
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3679856/ https://www.ncbi.nlm.nih.gov/pubmed/23444967 http://dx.doi.org/10.1186/1471-2105-14-70

Ejemplares similares

Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach
por: Gunnarsson, Lina, et al.
Publicado: (2007)

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics
por: Jonsson, Viktor, et al.
Publicado: (2016)

Weighted analysis of general microarray experiments
por: Sjögren, Anders, et al.
Publicado: (2007)

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences
por: Boulund, Fredrik, et al.
Publicado: (2012)

HirBin: high-resolution identification of differentially abundant functions in metagenomes
por: Österlund, Tobias, et al.
Publicado: (2017)

Identification and reconstruction of novel antibiotic resistance genes from metagenomes
por: Berglund, Fanny, et al.
Publicado: (2019)

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals
por: Nelander, Sven, et al.
Publicado: (2005)

ECOdrug: a database connecting drugs and conservation of their targets across species
por: Verbruggen, Bas, et al.
Publicado: (2018)

Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes
por: Berglund, Fanny, et al.
Publicado: (2020)

Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data
por: Berglund, Fanny, et al.
Publicado: (2017)

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
por: Pal, Chandan, et al.
Publicado: (2015)

CMY-1/MOX-family AmpC β-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species
por: Ebmeyer, Stefan, et al.
Publicado: (2019)

A framework for identifying the recent origins of mobile antibiotic resistance genes
por: Ebmeyer, Stefan, et al.
Publicado: (2021)

Progesterone-mediated effects on gene expression and oocyte-cumulus complex transport in the mouse fallopian tube
por: Bylander, Anna, et al.
Publicado: (2015)

A phenol/chloroform-free method to extract nucleic acids from recalcitrant, woody tropical species for gene expression and sequencing
por: Barbier, François F., et al.
Publicado: (2019)

The FAST technique: a simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species
por: Li, Jian-Feng, et al.
Publicado: (2009)

A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis
por: Qin, Wenyi, et al.
Publicado: (2018)

A novel method to identify gene interaction patterns
por: Lu, Xinguo, et al.
Publicado: (2021)

Functional verification of computationally predicted qnr genes
por: Flach, Carl-Fredrik, et al.
Publicado: (2013)

Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression
por: Yadetie, Fekadu, et al.
Publicado: (2004)

Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge
por: Berglund, Fanny, et al.
Publicado: (2023)

Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae
por: Thorsen, Michael, et al.
Publicado: (2009)

The Association between Insertion Sequences and Antibiotic Resistance Genes
por: Razavi, Mohammad, et al.
Publicado: (2020)

A comprehensive survey of integron-associated genes present in metagenomes
por: Buongermino Pereira, Mariana, et al.
Publicado: (2020)

Rapid effects of progesterone on ciliary beat frequency in the mouse fallopian tube
por: Bylander, Anna, et al.
Publicado: (2010)

A Novel mRNA Level Subtraction Method for Quick Identification of Target-Orientated Uniquely Expressed Genes Between Peanut Immature Pod and Leaf
por: Wu, Ning, et al.
Publicado: (2009)

Novel methods to identify biologically relevant genes for leukemia and prostate cancer from gene expression profiles
por: Chen, Austin H, et al.
Publicado: (2010)

Reranking candidate gene models with cross-species comparison for improved gene prediction
por: Liu, Qian, et al.
Publicado: (2008)

Random error units, extension of a novel method to express random error in epidemiological studies
por: Janszky, Imre, et al.
Publicado: (2019)

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets
por: Boulund, Fredrik, et al.
Publicado: (2017)

A novel procedure for absolute real-time quantification of gene expression patterns
por: Lu, Yingqing, et al.
Publicado: (2012)

A novel biclustering approach with iterative optimization to analyze gene expression data
por: Sutheeworapong, Sawannee, et al.
Publicado: (2012)

Easy and rapid method for the determination of gene expression in cumulus cells incubated for oocyte maturation
por: Kumamoto, Kanako, et al.
Publicado: (2005)

An evaluation of LSU rDNA D1-D2 sequences for their use in species identification
por: Sonnenberg, Rainer, et al.
Publicado: (2007)

Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing
por: Sandberg, Julia, et al.
Publicado: (2010)

A statistical network pre-processing method to improve relevance and significance of gene lists in microarray gene expression studies
por: Agapito, Giuseppe, et al.
Publicado: (2022)

BacMet: antibacterial biocide and metal resistance genes database
por: Pal, Chandan, et al.
Publicado: (2014)

A novel PCR-based method for high throughput prokaryotic expression of antimicrobial peptide genes
por: Ke, Tao, et al.
Publicado: (2012)

Protocol: a fast and simple in situ PCR method for localising gene expression in plant tissue
por: Athman, Asmini, et al.
Publicado: (2014)

A rapid and efficient method for uniform gene expression using the barley stripe mosaic virus
por: Cheuk, Arnaud, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_s8bk9ao12rl1modub3qipuh4nt