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Disk-based k-mer counting on a PC

BACKGROUND: The k-mer counting problem, which is to build the histogram of occurrences of every k-symbol long substring in a given text, is important for many bioinformatics applications. They include developing de Bruijn graph genome assemblers, fast multiple sequence alignment and repeat detection...

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Detalles Bibliográficos
Autores principales:	Deorowicz, Sebastian, Debudaj-Grabysz, Agnieszka, Grabowski, Szymon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680041/ https://www.ncbi.nlm.nih.gov/pubmed/23679007 http://dx.doi.org/10.1186/1471-2105-14-160

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