Cargando…

MIMO: an efficient tool for molecular interaction maps overlap

BACKGROUND: Molecular pathways represent an ensemble of interactions occurring among molecules within the cell and between cells. The identification of similarities between molecular pathways across organisms and functions has a critical role in understanding complex biological processes. For the in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Di Lena, Pietro, Wu, Gang, Martelli, Pier Luigi, Casadio, Rita, Nardini, Christine
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680968/ https://www.ncbi.nlm.nih.gov/pubmed/23672344 http://dx.doi.org/10.1186/1471-2105-14-159

Ejemplares similares

MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries
por: Chen, Wen Han, et al.
Publicado: (2011)

MimoSA: a system for minimotif annotation
por: Vyas, Jay, et al.
Publicado: (2010)

MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts
por: Hita, Andrea, et al.
Publicado: (2022)

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases
por: Di Lena, Pietro, et al.
Publicado: (2015)

Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions
por: Savojardo, Castrense, et al.
Publicado: (2022)

Pyviko: an automated Python tool to design gene knockouts in complex viruses with overlapping genes
por: Taylor, Louis J., et al.
Publicado: (2017)

DotMapper: an open source tool for creating interactive disease point maps
por: Smith, Catherine M., et al.
Publicado: (2016)

The Proteogenomic Mapping Tool
por: Sanders, William S, et al.
Publicado: (2011)

PhenPath: a tool for characterizing biological functions underlying different phenotypes
por: Babbi, Giulia, et al.
Publicado: (2019)

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly
por: Oliveira, Renato Renison Moreira, et al.
Publicado: (2018)

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool
por: Gysi, Deisy Morselli, et al.
Publicado: (2018)

KinMap: a web-based tool for interactive navigation through human kinome data
por: Eid, Sameh, et al.
Publicado: (2017)

A method for automated pathogenic content estimation with application to rheumatoid arthritis
por: Zhou, Xiaoyuan, et al.
Publicado: (2016)

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
por: Chalmel, Frédéric, et al.
Publicado: (2008)

PROMPT: a protein mapping and comparison tool
por: Schmidt, Thorsten, et al.
Publicado: (2006)

HiCmapTools: a tool to access HiC contact maps
por: Chang, Jia-Ming, et al.
Publicado: (2022)

SAGE: String-overlap Assembly of GEnomes
por: Ilie, Lucian, et al.
Publicado: (2014)

SFREEMAP - A simulation-free tool for stochastic mapping
por: Pasqualin, Diego, et al.
Publicado: (2017)

Detecting overlapping coding sequences in virus genomes
por: Firth, Andrew E, et al.
Publicado: (2006)

GCORE-sib: An efficient gene-gene interaction tool for genome-wide association studies based on discordant sib pairs
por: Sung, Pei-Yuan, et al.
Publicado: (2016)

Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes
por: Savojardo, Castrense, et al.
Publicado: (2021)

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
por: Hankeln, Wolfgang, et al.
Publicado: (2010)

An efficient visualization tool for the analysis of protein mutation matrices
por: David, Maria Pamela C, et al.
Publicado: (2008)

ReadDB Provides Efficient Storage for Mapped Short Reads
por: Rolfe, P Alexander, et al.
Publicado: (2011)

HapMap filter 1.0: A tool to preprocess the HapMap genotypic data for association studies
por: Zhang, Wei, et al.
Publicado: (2008)

CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
por: del Val, Coral, et al.
Publicado: (2006)

MIMOX: a web tool for phage display based epitope mapping
por: Huang, Jian, et al.
Publicado: (2006)

GSAlign: an efficient sequence alignment tool for intra-species genomes
por: Lin, Hsin-Nan, et al.
Publicado: (2020)

Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping
por: Babbi, Giulia, et al.
Publicado: (2022)

OmniMapFree: A unified tool to visualise and explore sequenced genomes
por: Antoniw, John, et al.
Publicado: (2011)

cDNA2Genome: A tool for mapping and annotating cDNAs
por: del Val, Coral, et al.
Publicado: (2003)

A flexible tool to plot a genomic map for single nucleotide polymorphisms
por: Zhang, Fuquan
Publicado: (2016)

DeepREx-WS: A web server for characterising protein–solvent interaction starting from sequence
por: Manfredi, Matteo, et al.
Publicado: (2021)

SNP-VISTA: An interactive SNP visualization tool
por: Shah, Nameeta, et al.
Publicado: (2005)

The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis
por: Chan, Yen On, et al.
Publicado: (2023)

BarWare: efficient software tools for barcoded single-cell genomics
por: Swanson, Elliott, et al.
Publicado: (2022)

s-dePooler: determination of polymorphism carriers from overlapping DNA pools
por: Zhernakov, Aleksandr Igorevich, et al.
Publicado: (2019)

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps
por: Kuperstein, Inna, et al.
Publicado: (2013)

An open-source software tool for the generation of relaxation time maps in magnetic resonance imaging
por: Messroghli, Daniel R, et al.
Publicado: (2010)

FC_analysis: a tool for investigating atomic force microscopy maps of force curves
por: Dinarelli, Simone, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_si7egiklevihk8sjkpelev65do